Transcript: Human NM_005943.5

Homo sapiens molybdenum cofactor synthesis 1 (MOCS1), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-04
Taxon:
Homo sapiens (human)
Gene:
MOCS1 (4337)
Length:
4163
CDS:
139..1296

Additional Resources:

NCBI RefSeq record:
NM_005943.5
NBCI Gene record:
MOCS1 (4337)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_005943.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000045653 CCTGCCAAGTTTGAGTTCATT pLKO.1 688 CDS 100% 5.625 3.938 N MOCS1 n/a
2 TRCN0000291722 CCTGCCAAGTTTGAGTTCATT pLKO_005 688 CDS 100% 5.625 3.938 N MOCS1 n/a
3 TRCN0000045656 CAGACTCAGATGCCAACTCAA pLKO.1 1511 3UTR 100% 4.950 3.465 N MOCS1 n/a
4 TRCN0000291661 CAGACTCAGATGCCAACTCAA pLKO_005 1511 3UTR 100% 4.950 3.465 N MOCS1 n/a
5 TRCN0000045657 GAGGATGAACTCCTGGACTTT pLKO.1 814 CDS 100% 4.950 3.465 N MOCS1 n/a
6 TRCN0000291721 GAGGATGAACTCCTGGACTTT pLKO_005 814 CDS 100% 4.950 3.465 N MOCS1 n/a
7 TRCN0000045655 GCTCTTTGTGAAGGAAGGCAT pLKO.1 474 CDS 100% 2.640 1.848 N MOCS1 n/a
8 TRCN0000291660 GCTCTTTGTGAAGGAAGGCAT pLKO_005 474 CDS 100% 2.640 1.848 N MOCS1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_005943.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10226 pDONR223 100% 72.9% 72.7% None 1_261del;1103_1110delGCATGTTC;1113_1155del n/a
2 ccsbBroad304_10226 pLX_304 0% 72.9% 72.7% V5 1_261del;1103_1110delGCATGTTC;1113_1155del n/a
3 TRCN0000470477 CCGGCGGCCGCAACAATTGCAAAG pLX_317 46.5% 72.9% 72.7% V5 1_261del;1103_1110delGCATGTTC;1113_1155del n/a
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