Transcript: Human NM_006392.4

Homo sapiens NOP56 ribonucleoprotein (NOP56), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
NOP56 (10528)
Length:
1913
CDS:
30..1814

Additional Resources:

NCBI RefSeq record:
NM_006392.4
NBCI Gene record:
NOP56 (10528)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_006392.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000276445 ACCGATCTGTCAGCTTGTAAA pLKO_005 438 CDS 100% 13.200 18.480 N NOP56 n/a
2 TRCN0000276444 AGTGGTACGGGTATCACTTTC pLKO_005 601 CDS 100% 10.800 15.120 N NOP56 n/a
3 TRCN0000179801 CCCAGTTTATTGGAAACCGAA pLKO.1 670 CDS 100% 2.640 2.112 N NOP56 n/a
4 TRCN0000276500 ACAGGAGAAGAAACGCTTAAA pLKO_005 1352 CDS 100% 13.200 9.240 N NOP56 n/a
5 TRCN0000276559 CCGTGCCAAAGTTAAGTTTAA pLKO_005 488 CDS 100% 13.200 9.240 N NOP56 n/a
6 TRCN0000276499 TATGATCATCCAGTCCATTAG pLKO_005 527 CDS 100% 10.800 7.560 N NOP56 n/a
7 TRCN0000148717 CATAAAGCATCCCAGGAAGAT pLKO.1 1791 CDS 100% 4.950 3.465 N NOP56 n/a
8 TRCN0000148851 CCTGGCAAACAAATGCAGTAT pLKO.1 1142 CDS 100% 4.950 3.465 N NOP56 n/a
9 TRCN0000146888 CTTGATAAACATCGAGAGCTT pLKO.1 809 CDS 100% 2.640 1.848 N NOP56 n/a
10 TRCN0000180406 GCCCAGTTTATTGGAAACCGA pLKO.1 669 CDS 100% 0.750 0.525 N NOP56 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_006392.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11515 pDONR223 100% 29.2% 29.2% None 1_1260del n/a
2 ccsbBroad304_11515 pLX_304 0% 29.2% 29.2% V5 1_1260del n/a
3 TRCN0000469047 TGGCACCAGCCAGTGGTTTCCGGC pLX_317 88% 29.2% 29.2% V5 1_1260del n/a
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