Transcript: Human NM_006454.3

Homo sapiens MAX dimerization protein 4 (MXD4), mRNA.

Source:
NCBI, updated 2019-06-30
Taxon:
Homo sapiens (human)
Gene:
MXD4 (10608)
Length:
3871
CDS:
130..759

Additional Resources:

NCBI RefSeq record:
NM_006454.3
NBCI Gene record:
MXD4 (10608)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_006454.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000021085 CTTCACACAACGAGCTAGAAA pLKO.1 296 CDS 100% 5.625 7.875 N MXD4 n/a
2 TRCN0000021087 GACATAGAGGGCATGGAGTTT pLKO.1 607 CDS 100% 4.950 3.465 N MXD4 n/a
3 TRCN0000431866 GAGCAAGAAGTGGACATAGAG pLKO_005 595 CDS 100% 4.950 3.465 N MXD4 n/a
4 TRCN0000021088 GCCAAACTCAGGCTGTACCTT pLKO.1 328 CDS 100% 3.000 2.100 N MXD4 n/a
5 TRCN0000413880 ACTGAGCATCAAGGAGCAGCT pLKO_005 465 CDS 100% 2.160 1.512 N MXD4 n/a
6 TRCN0000418535 GTGCACATCAAGAAACTGGAG pLKO_005 427 CDS 100% 2.160 1.512 N MXD4 n/a
7 TRCN0000021086 GCAGGAGCATCGTTTCCTGAA pLKO.1 489 CDS 100% 0.405 0.284 N MXD4 n/a
8 TRCN0000021084 CCAGAAGTATTAAACGTCATT pLKO.1 1049 3UTR 100% 4.950 2.970 N MXD4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_006454.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11528 pDONR223 100% 27.1% 26.3% None (many diffs) n/a
2 ccsbBroad304_11528 pLX_304 0% 27.1% 26.3% V5 (many diffs) n/a
3 TRCN0000472142 CTGTCATCTCTGGACGTGGCCGCT pLX_317 100% 27.1% 26.3% V5 (many diffs) n/a
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