Transcript: Human NM_006504.6

Homo sapiens protein tyrosine phosphatase receptor type E (PTPRE), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
PTPRE (5791)
Length:
5289
CDS:
238..2340

Additional Resources:

NCBI RefSeq record:
NM_006504.6
NBCI Gene record:
PTPRE (5791)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_006504.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000315199 GGTCAAATAATATCCCATAAA pLKO_005 2533 3UTR 100% 13.200 18.480 N PTPRE n/a
2 TRCN0000002893 CCGAGTGATCCTTTCCATGAA pLKO.1 1635 CDS 100% 4.950 6.930 N PTPRE n/a
3 TRCN0000315196 CCGAGTGATCCTTTCCATGAA pLKO_005 1635 CDS 100% 4.950 6.930 N PTPRE n/a
4 TRCN0000235613 AGGATAAATGCTACCAGTATT pLKO_005 1835 CDS 100% 13.200 9.240 N Ptpre n/a
5 TRCN0000315212 AGGATAAATGCTACCAGTATT pLKO_005 1835 CDS 100% 13.200 9.240 N PTPRE n/a
6 TRCN0000315198 CTGCGACCATCGTCATGTTAA pLKO_005 917 CDS 100% 13.200 9.240 N PTPRE n/a
7 TRCN0000002894 GCTACCGACAGAAGGACTATT pLKO.1 1703 CDS 100% 13.200 9.240 N PTPRE n/a
8 TRCN0000315197 GCTACCGACAGAAGGACTATT pLKO_005 1703 CDS 100% 13.200 9.240 N PTPRE n/a
9 TRCN0000381158 TCATAGCCCTCAGCAACATTT pLKO_005 2156 CDS 100% 13.200 9.240 N PTPRE n/a
10 TRCN0000002896 TGGACACATACAAGGAACTTT pLKO.1 669 CDS 100% 5.625 3.938 N PTPRE n/a
11 TRCN0000002895 ACGTTCATCTACCAAGCCTTA pLKO.1 1390 CDS 100% 4.050 2.835 N PTPRE n/a
12 TRCN0000010744 CAAGAAGATGCCCAACGGAAT pLKO.1 486 CDS 100% 4.050 2.835 N PTPRE n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_006504.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06817 pDONR223 100% 99.8% 100% None 1218C>A;1254C>A;1962A>G n/a
2 ccsbBroad304_06817 pLX_304 0% 99.8% 100% V5 1218C>A;1254C>A;1962A>G n/a
3 TRCN0000478447 GGGGGCCTAAGAAGTTATTTTTAG pLX_317 13.3% 99.8% 100% V5 1218C>A;1254C>A;1962A>G n/a
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