Construct: ORF ccsbBroad304_06817

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013179.1_s304c1, BRDN0000403869
Derived from:
ccsbBroadEn_06817
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PTPRE (5791)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_06817
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5791 PTPRE protein tyrosine phosphatas... NM_001316677.2 99.8% 100% 1218C>A;1254C>A;1962A>G
2 human 5791 PTPRE protein tyrosine phosphatas... NM_001323354.2 99.8% 100% 1218C>A;1254C>A;1962A>G
3 human 5791 PTPRE protein tyrosine phosphatas... NM_006504.6 99.8% 100% 1218C>A;1254C>A;1962A>G
4 human 5791 PTPRE protein tyrosine phosphatas... XM_005252691.2 99.8% 100% 1218C>A;1254C>A;1962A>G
5 human 5791 PTPRE protein tyrosine phosphatas... XM_017016468.2 99.8% 100% 1218C>A;1254C>A;1962A>G
6 human 5791 PTPRE protein tyrosine phosphatas... NM_001316676.2 98.3% 98.4% (many diffs)
7 human 5791 PTPRE protein tyrosine phosphatas... NM_001323355.2 97% 97.2% (many diffs)
8 human 5791 PTPRE protein tyrosine phosphatas... XM_017016467.1 97% 97.2% (many diffs)
9 human 5791 PTPRE protein tyrosine phosphatas... XM_011539994.2 96.9% 97% (many diffs)
10 human 5791 PTPRE protein tyrosine phosphatas... NM_001323356.2 96.8% 96.9% (many diffs)
11 human 5791 PTPRE protein tyrosine phosphatas... XM_024448092.1 95.6% 95.7% (many diffs)
12 human 5791 PTPRE protein tyrosine phosphatas... XM_011539996.1 91.2% 91.3% (many diffs)
13 human 5791 PTPRE protein tyrosine phosphatas... NM_130435.5 91% 89.9% (many diffs)
14 human 5791 PTPRE protein tyrosine phosphatas... XM_011539995.1 86.4% 86.2% (many diffs)
15 human 5791 PTPRE protein tyrosine phosphatas... NM_001323357.2 68.4% 68.5% (many diffs)
16 human 5791 PTPRE protein tyrosine phosphatas... XM_024448093.1 68.4% 68.5% (many diffs)
17 human 5791 PTPRE protein tyrosine phosphatas... XM_017016469.2 64% 64.1% (many diffs)
18 human 5791 PTPRE protein tyrosine phosphatas... XM_011539998.1 52.1% 48.3% (many diffs)
19 human 5791 PTPRE protein tyrosine phosphatas... XR_002956995.1 34.1% (many diffs)
20 human 5791 PTPRE protein tyrosine phosphatas... XR_002956996.1 33.3% (many diffs)
21 mouse 19267 Ptpre protein tyrosine phosphatas... NM_001316679.1 86.6% 93.1% (many diffs)
22 mouse 19267 Ptpre protein tyrosine phosphatas... NM_011212.3 86.6% 93.1% (many diffs)
23 mouse 19267 Ptpre protein tyrosine phosphatas... NM_001316680.1 85% 91.4% (many diffs)
24 mouse 19267 Ptpre protein tyrosine phosphatas... NM_001316678.1 84.2% 90.5% (many diffs)
25 mouse 19267 Ptpre protein tyrosine phosphatas... NM_001316681.1 79% 85.4% (many diffs)
26 mouse 19267 Ptpre protein tyrosine phosphatas... XR_001785494.2 48.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2166
ORF length:
2100
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga gcccttgtgt ccactcctgc tggtgggttt tagcttgccg ctcgccaggg
121ctctcagggg caacgagacc actgccgaca gcaacgagac aaccacgacc tcaggccctc
181cggacccggg cgcctcccag ccgctgctgg cctggctgct actgccgctg ctgctcctcc
241tcctcgtgct ccttctcgcc gcctacttct tcaggttcag gaagcagagg aaagctgtgg
301tcagcaccag cgacaagaag atgcccaacg gaatcttgga ggagcaagag cagcaaaggg
361tgatgctgct cagcaggtca ccctcagggc ccaagaagta ttttcccatc cccgtggagc
421acctggagga ggagatccgt atcagatccg ccgacgactg caagcagttt cgggaggagt
481tcaactcatt gccatctgga cacatacaag gaacttttga actggcaaat aaagaagaaa
541acagagaaaa aaacagatat cccaacatcc ttcccaatga ccattctagg gtgattctga
601gccaactgga tggaattccc tgttcagact acatcaatgc ttcctacata gatggttaca
661aagagaagaa taaattcata gcagctcaag gtcccaaaca ggaaacggtt aacgacttct
721ggagaatggt ctgggagcaa aagtctgcga ccatcgtcat gttaacaaac ttgaaagaaa
781ggaaagagga aaagtgccat cagtactggc ccgaccaagg ctgctggacc tatggaaaca
841tccgggtgtg cgtggaggac tgcgtggttt tggtcgacta caccatccgg aagttctgca
901tacagccaca gctccccgac ggctgcaaag cccccaggct ggtctcacag ctgcacttca
961ccagctggcc cgacttcgga gtgcctttta cccccattgg gatgctgaag ttcctcaaga
1021aagtaaagac gctcaacccc gtgcacgctg ggcccatcgt ggtccactgt agcgcgggcg
1081tgggccggac gggcaccttc attgtgatcg atgccatgat ggccatgatg cacgcggagc
1141agaaggtgga tgtgtttgaa tttgtgtctc gaatccgtaa tcagcgccct cagatggttc
1201aaacggatat gcagtacacg ttcatctacc aagccttact cgagtactac ctctacgggg
1261acacagagct ggacgtgtcc tcactggaga agcacctgca gaccatgcac ggcaccacaa
1321cccacttcga caagatcggg ctggaggagg agttcaggaa attgacaaat gtccggatca
1381tgaaggagaa catgaggacg ggcaacttgc cggcaaacat gaagaaggcc agggtcatcc
1441agatcatccc gtatgacttc aaccgagtga tcctttccat gaaaaggggt caagaataca
1501cagactacat caacgcatcc ttcatagacg gctaccgaca gaaggactat ttcatcgcca
1561cccaggggcc actggcacac acggttgagg acttctggag gatgatctgg gaatggaaat
1621cccacactat cgtgatgctg acggaggtgc aggagagaga gcaggataaa tgctaccagt
1681attggccaac cgagggctca gttactcatg gagaaataac gattgagata aagaatgata
1741ccctttcaga agccatcagt atacgagact ttctggtcac tctcaatcag ccccaggccc
1801gccaggagga gcaggtccga gtagtgcgcc agtttcactt ccacggctgg cctgagatcg
1861ggattcccgc cgagggcaaa ggcatgattg acctcatcgc agccgtgcag aagcagcagc
1921agcagacagg caaccacccc atcaccgtgc actgcagtgc cggagctggg cgaacaggta
1981cattcatagc cctcagcaac attttggagc gagtaaaagc cgaggggctt ttagatgtat
2041ttcaagctgt gaagagttta cgacttcaga gaccacatat ggtgcaaacc ctggaacagt
2101atgaattctg ctacaaagtg gtacaagatt ttattgatat attttctgat tatgctaatt
2161tcaaatgccc aactttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg
2221gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca
2281acctctggat ta

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