Transcript: Human NM_007238.5

Homo sapiens peroxisomal membrane protein 4 (PXMP4), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-07
Taxon:
Homo sapiens (human)
Gene:
PXMP4 (11264)
Length:
5690
CDS:
104..742

Additional Resources:

NCBI RefSeq record:
NM_007238.5
NBCI Gene record:
PXMP4 (11264)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_007238.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000369618 ACGGTTTGTGTTCACCTACAA pLKO_005 340 CDS 100% 4.950 6.930 N PXMP4 n/a
2 TRCN0000130932 CAGCAATGTATGGCACGACAT pLKO.1 679 CDS 100% 4.050 5.670 N PXMP4 n/a
3 TRCN0000129267 CCACATATATCCACTCCTGGA pLKO.1 312 CDS 100% 2.160 3.024 N PXMP4 n/a
4 TRCN0000330386 CCACATATATCCACTCCTGGA pLKO_005 312 CDS 100% 2.160 3.024 N PXMP4 n/a
5 TRCN0000330317 AGAGCCGTCCCTCCAATTAAT pLKO_005 723 CDS 100% 15.000 10.500 N PXMP4 n/a
6 TRCN0000147997 GCAGTGGGTTGTAAATACTTT pLKO.1 1117 3UTR 100% 5.625 3.938 N PXMP4 n/a
7 TRCN0000127652 CAAAGGATACTGCCTTCTCAA pLKO.1 798 3UTR 100% 4.950 3.465 N PXMP4 n/a
8 TRCN0000330387 CAAAGGATACTGCCTTCTCAA pLKO_005 798 3UTR 100% 4.950 3.465 N PXMP4 n/a
9 TRCN0000330388 TCAGACTTCCTCGTCTATAAC pLKO_005 701 CDS 100% 13.200 7.920 N PXMP4 n/a
10 TRCN0000127494 CCAGATCAACATGTACCTGTT pLKO.1 475 CDS 100% 4.050 2.430 N PXMP4 n/a
11 TRCN0000256745 CAGCCTGGCCAACATGGTAAA pLKO_005 2308 3UTR 100% 10.800 5.400 Y SMIM11A n/a
12 TRCN0000007228 CACCTGTAATCCCAGCACTTT pLKO.1 3178 3UTR 100% 4.950 2.475 Y CFLAR n/a
13 TRCN0000166635 CACCTGTAATCCCAGCACTTT pLKO.1 3178 3UTR 100% 4.950 2.475 Y C19orf31 n/a
14 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 2242 3UTR 100% 4.950 2.475 Y ERAP2 n/a
15 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 2243 3UTR 100% 13.200 6.600 Y LIAS n/a
16 TRCN0000138772 GCAGGAGAATCGCTTGAACTT pLKO.1 2409 3UTR 100% 4.950 2.475 Y DCAF11 n/a
17 TRCN0000180418 GATCACTTGAGCTCAGGAGTT pLKO.1 1327 3UTR 100% 4.050 2.025 Y ERN2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_007238.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07789 pDONR223 100% 99.8% 99.5% None 610G>A n/a
2 ccsbBroad304_07789 pLX_304 0% 99.8% 99.5% V5 610G>A n/a
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