Transcript: Mouse NM_008703.2

Mus musculus neuromedin B receptor (Nmbr), mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Nmbr (18101)
Length:
1173
CDS:
1..1173

Additional Resources:

NCBI RefSeq record:
NM_008703.2
NBCI Gene record:
Nmbr (18101)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_008703.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000027522 CCTCTACTTGTATAGGTCTTT pLKO.1 852 CDS 100% 4.950 6.930 N Nmbr n/a
2 TRCN0000415357 ACATAGCACAAAGCAAGAAAT pLKO_005 1143 CDS 100% 13.200 9.240 N Nmbr n/a
3 TRCN0000431265 ATCATGCTGGTGAAGATATTC pLKO_005 184 CDS 100% 13.200 9.240 N Nmbr n/a
4 TRCN0000027506 CCTTGTTATCATCAGCATTTA pLKO.1 672 CDS 100% 13.200 9.240 N Nmbr n/a
5 TRCN0000426996 ACGCCTCCCGTTACTTCTTTG pLKO_005 299 CDS 100% 10.800 7.560 N Nmbr n/a
6 TRCN0000027557 CCACAAACAGATGAGTTACAT pLKO.1 604 CDS 100% 5.625 3.938 N Nmbr n/a
7 TRCN0000027500 CCCTAACATCTTCATCTCTAA pLKO.1 231 CDS 100% 4.950 3.465 N Nmbr n/a
8 TRCN0000009193 CCTGGAGAATACAATGAACAT pLKO.1 739 CDS 100% 4.950 3.465 N NMBR n/a
9 TRCN0000027569 GCTAAGATTGTTCTGGTCTTT pLKO.1 793 CDS 100% 4.950 2.970 N Nmbr n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_008703.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000487759 TCAAAGTAATATCTTCCCCTCGTC pLX_317 21.9% 86.2% 90% V5 (many diffs) n/a
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