Transcript: Mouse NM_008900.2

Mus musculus POU domain, class 3, transcription factor 3 (Pou3f3), mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Pou3f3 (18993)
Length:
3080
CDS:
1..1494

Additional Resources:

NCBI RefSeq record:
NM_008900.2
NBCI Gene record:
Pou3f3 (18993)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_008900.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000374156 AGATGCCTAACGCACCTAAAC pLKO_005 1952 3UTR 100% 10.800 15.120 N Pou3f3 n/a
2 TRCN0000075437 CGCCGCAGAGTCTGCTGTACT pLKO.1 644 CDS 100% 0.000 0.000 N Pou3f3 n/a
3 TRCN0000315918 CGCCGCAGAGTCTGCTGTACT pLKO_005 644 CDS 100% 0.000 0.000 N Pou3f3 n/a
4 TRCN0000374216 TCAGACCAGCGTGCAGTGAAT pLKO_005 1476 CDS 100% 4.950 3.960 N Pou3f3 n/a
5 TRCN0000304400 CAACAGGGACATCTCGTTTAT pLKO_005 1891 3UTR 100% 13.200 9.240 N Pou3f3 n/a
6 TRCN0000005753 GATGGTCCAGAGCGACTTCAT pLKO.1 210 CDS 100% 4.950 3.465 N POU3F3 n/a
7 TRCN0000349003 GATGGTCCAGAGCGACTTCAT pLKO_005 210 CDS 100% 4.950 3.465 N Pou3f3 n/a
8 TRCN0000075436 GCAGCTCAGTTTCAAGAACAT pLKO.1 1089 CDS 100% 4.950 3.465 N Pou3f3 n/a
9 TRCN0000379001 GGCGCAGGAAATCACCAACTT pLKO_005 1287 CDS 100% 4.950 3.465 N Pou3f3 n/a
10 TRCN0000075433 GCGGAGCATCATCACCACCAT pLKO.1 799 CDS 100% 0.880 0.616 N Pou3f3 n/a
11 TRCN0000010964 GCCCGGAGGCTTCACGGTGAA pLKO.1 669 CDS 100% 0.000 0.000 N POU3F3 n/a
12 TRCN0000304401 AGTTCGCTAAGCAGTTCAAAC pLKO_005 962 CDS 100% 10.800 6.480 N Pou3f3 n/a
13 TRCN0000075435 TCCATCGAGGTTAGCGTCAAA pLKO.1 1225 CDS 100% 4.950 2.970 N Pou3f3 n/a
14 TRCN0000075434 CCACTTCCTCAAGTGCCCTAA pLKO.1 1260 CDS 100% 0.405 0.243 N Pou3f3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_008900.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.