Transcript: Mouse NM_009012.2

Mus musculus RAD50 double strand break repair protein (Rad50), mRNA.

Source:
NCBI, updated 2017-05-20
Taxon:
Mus musculus (mouse)
Gene:
Rad50 (19360)
Length:
5153
CDS:
265..4203

Additional Resources:

NCBI RefSeq record:
NM_009012.2
NBCI Gene record:
Rad50 (19360)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_009012.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000120626 CGAAAGCTGAACGTGAATTAA pLKO.1 1709 CDS 100% 15.000 21.000 N Rad50 n/a
2 TRCN0000353397 CGAAAGCTGAACGTGAATTAA pLKO_005 1709 CDS 100% 15.000 21.000 N Rad50 n/a
3 TRCN0000120624 CCATTGAAGAATCGCCTGAAA pLKO.1 1012 CDS 100% 4.950 6.930 N Rad50 n/a
4 TRCN0000336380 CCATTGAAGAATCGCCTGAAA pLKO_005 1012 CDS 100% 4.950 6.930 N Rad50 n/a
5 TRCN0000120625 GCAACTTCCAACTTCTGGTAA pLKO.1 4043 CDS 100% 4.950 3.960 N Rad50 n/a
6 TRCN0000353398 GCAACTTCCAACTTCTGGTAA pLKO_005 4043 CDS 100% 4.950 3.960 N Rad50 n/a
7 TRCN0000336382 TCTGAAGCTTGAAGGTATATT pLKO_005 4423 3UTR 100% 15.000 10.500 N Rad50 n/a
8 TRCN0000040105 CGACCATCATTGAATGTCTAA pLKO.1 392 CDS 100% 4.950 3.465 N RAD50 n/a
9 TRCN0000120623 GCCAAGATTTGGAAAGTGATT pLKO.1 2168 CDS 100% 4.950 3.465 N Rad50 n/a
10 TRCN0000336381 GCCAAGATTTGGAAAGTGATT pLKO_005 2168 CDS 100% 4.950 3.465 N Rad50 n/a
11 TRCN0000120622 GCTGGCTGTTAGAGAAGAGTT pLKO.1 4616 3UTR 100% 4.950 2.970 N Rad50 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_009012.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.