Transcript: Mouse NM_009030.3

Mus musculus retinoblastoma binding protein 4, chromatin remodeling factor (Rbbp4), mRNA.

Source:
NCBI, updated 2017-05-20
Taxon:
Mus musculus (mouse)
Gene:
Rbbp4 (19646)
Length:
4407
CDS:
138..1415

Additional Resources:

NCBI RefSeq record:
NM_009030.3
NBCI Gene record:
Rbbp4 (19646)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_009030.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000110221 CCCACCAGAATTGTTGTTTAT pLKO.1 1223 CDS 100% 13.200 18.480 N Rbbp4 n/a
2 TRCN0000313825 ATTTGGGACACTCGTTCAAAC pLKO_005 897 CDS 100% 10.800 15.120 N Rbbp4 n/a
3 TRCN0000110222 GCGGAGAACATTTACAATGAT pLKO.1 1350 CDS 100% 5.625 7.875 N Rbbp4 n/a
4 TRCN0000317347 GCGGAGAACATTTACAATGAT pLKO_005 1350 CDS 100% 5.625 7.875 N Rbbp4 n/a
5 TRCN0000110220 CCCTGTAAGATTGAAAGAAAT pLKO.1 3464 3UTR 100% 13.200 9.240 N Rbbp4 n/a
6 TRCN0000313759 CCCTGCATCATTGCAACAAAG pLKO_005 546 CDS 100% 10.800 7.560 N Rbbp4 n/a
7 TRCN0000313850 GTTAGTCTTTGACCACTATAG pLKO_005 1866 3UTR 100% 10.800 7.560 N Rbbp4 n/a
8 TRCN0000110223 CCTCACAATGAGACTATCTTA pLKO.1 1116 CDS 100% 5.625 3.938 N Rbbp4 n/a
9 TRCN0000317346 CCTCACAATGAGACTATCTTA pLKO_005 1116 CDS 100% 5.625 3.938 N Rbbp4 n/a
10 TRCN0000110224 GCATCCCATTATGACAGTGAA pLKO.1 420 CDS 100% 4.950 3.465 N Rbbp4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_009030.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06847 pDONR223 100% 92% 100% None (many diffs) n/a
2 ccsbBroad304_06847 pLX_304 0% 92% 100% V5 (many diffs) n/a
3 TRCN0000474533 GGCCTAGCATACCTGGTGTTGGAG pLX_317 42.7% 92% 100% V5 (many diffs) n/a
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