Construct: ORF TRCN0000474533

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014408.1_s317c1
Derived from:
ccsbBroadEn_06847
DNA Barcode:
GGCCTAGCATACCTGGTGTTGGAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RBBP4 (5928)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000474533
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5928 RBBP4 RB binding protein 4, chrom... NM_005610.3 99.8% 100% 453T>C;795A>C
2 human 5928 RBBP4 RB binding protein 4, chrom... NM_001135255.2 99.6% 99.7% 14_15insAGC;450T>C;792A>C
3 human 5928 RBBP4 RB binding protein 4, chrom... NM_001135256.1 91.6% 91.7% 0_1ins105;348T>C;690A>C
4 mouse 19646 Rbbp4 retinoblastoma binding prot... NM_009030.3 92% 100% (many diffs)
5 mouse 19646 Rbbp4 retinoblastoma binding prot... XR_001784111.1 63.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1341
ORF length:
1275
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc cgacaaggaa gcagccttcg acgacgcagt ggaagaacga gtgatcaacg
121aggaatacaa aatatggaaa aagaacaccc cttttcttta tgatttggtg atgacccatg
181ctctggagtg gcccagccta actgcccagt ggcttccaga tgtaaccaga ccagaaggga
241aagatttcag cattcatcga cttgtcctgg ggacacacac atcggatgaa caaaaccatc
301ttgttatagc cagtgtgcag ctccctaatg atgatgctca gtttgatgcg tcacactacg
361acagtgagaa aggagaattt ggaggttttg gttcagttag tggaaaaatt gaaatagaaa
421tcaagatcaa ccatgaagga gaagtaaaca gggcccgtta tatgccccag aacccttgta
481tcatcgcaac aaagactcct tccagtgatg ttcttgtctt tgactataca aaacatcctt
541ctaaaccaga tccttctgga gagtgcaacc cagacttgcg tctccgtgga catcagaagg
601aaggctatgg gctttcttgg aacccaaatc tcagtgggca cttacttagt gcttcagatg
661accataccat ctgcctgtgg gacatcagtg ccgttccaaa ggagggaaaa gtggtagatg
721cgaagaccat ctttacaggg catacggcag tagtagaaga tgtttcctgg catctactcc
781atgagtctct gtttgggTCA GTTGCTGATG ATCAGAAACT TATGATTTGG GATACTCGTT
841CAAACAATAC TTCCAAACCC AGCCACTCAG TTGATGCTCA CACTGCTGAA GTGAACTGCC
901TTTCTTTCAA TCCTTATAGT GAGTTCATTC TTGCCACAGG ATCAGCTGAC AAGACTGTTG
961CCTTGTGGGA TCTGAGAAAT CTGAAACTTA AGTTGCATTC CTTTGAGTCA CATAAGGATG
1021AAATATTCCA GGTTCAGTGG TCACCTCACA ATGAGACTAT TTTAGCTTCC AGTGGTACTG
1081ATCGCAGACT GAATGTCTGG GATTTAAGTA AAATTGGAGA GGAACAATCC CCAGAAGATG
1141CAGAAGACGG GCCACCAGAG TTGTTGTTTA TTCATGGTGG TCATACTGCC AAGATATCTG
1201ATTTCTCCTG GAATCCCAAT GAACCTTGGG TGATTTGTTC TGTATCAGAA GACAATATCA
1261TGCAAGTGTG GCAAATGGCA GAGAACATTT ATAATGATGA AGACCCTGAA GGAAGCGTGG
1321ATCCAGAAGG ACAAGGGTCC TACCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
1381CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
1441AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGAGGCC TAGCATACCT
1501GGTGTTGGAG ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)