Transcript: Mouse NM_009671.5

Mus musculus ankyrin repeat and FYVE domain containing 1 (Ankfy1), mRNA.

Source:
NCBI, updated 2017-05-20
Taxon:
Mus musculus (mouse)
Gene:
Ankfy1 (11736)
Length:
8034
CDS:
24..3533

Additional Resources:

NCBI RefSeq record:
NM_009671.5
NBCI Gene record:
Ankfy1 (11736)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_009671.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000071459 GCTTAACGAAACAGATCATAA pLKO.1 767 CDS 100% 13.200 18.480 N Ankfy1 n/a
2 TRCN0000301705 GCTTAACGAAACAGATCATAA pLKO_005 767 CDS 100% 13.200 18.480 N Ankfy1 n/a
3 TRCN0000071462 GATGCTTCTAAGACAAGAGTA pLKO.1 62 CDS 100% 4.950 6.930 N Ankfy1 n/a
4 TRCN0000301628 GATGCTTCTAAGACAAGAGTA pLKO_005 62 CDS 100% 4.950 6.930 N Ankfy1 n/a
5 TRCN0000071458 GCCGTCTTCTTTGCCATAAAT pLKO.1 3412 CDS 100% 15.000 10.500 N Ankfy1 n/a
6 TRCN0000301632 GCCGTCTTCTTTGCCATAAAT pLKO_005 3412 CDS 100% 15.000 10.500 N Ankfy1 n/a
7 TRCN0000414618 CAATGCTTCGCTGGATCTATA pLKO_005 370 CDS 100% 13.200 9.240 N ANKFY1 n/a
8 TRCN0000071461 GCAAGAGCAGTACAGTGATTT pLKO.1 212 CDS 100% 13.200 9.240 N Ankfy1 n/a
9 TRCN0000301630 GCAAGAGCAGTACAGTGATTT pLKO_005 212 CDS 100% 13.200 9.240 N Ankfy1 n/a
10 TRCN0000071460 GCCTGAGTGCTCAGTTGTTAT pLKO.1 634 CDS 100% 13.200 9.240 N Ankfy1 n/a
11 TRCN0000301707 GCCTGAGTGCTCAGTTGTTAT pLKO_005 634 CDS 100% 13.200 9.240 N Ankfy1 n/a
12 TRCN0000182745 CCAGAGTTCAAATCCCAGCAA pLKO.1 7831 3UTR 100% 2.640 1.320 Y P3h3 n/a
13 TRCN0000320070 CCAGAGTTCAAATCCCAGCAA pLKO_005 7831 3UTR 100% 2.640 1.320 Y P3h3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_009671.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.