Transcript: Mouse NM_010294.1

Mus musculus glycerol kinase 2 (Gk2), mRNA.

Source:
NCBI, updated 2017-05-13
Taxon:
Mus musculus (mouse)
Gene:
Gk2 (14626)
Length:
1848
CDS:
32..1696

Additional Resources:

NCBI RefSeq record:
NM_010294.1
NBCI Gene record:
Gk2 (14626)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_010294.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000233999 TGAGTAGCATGACGTTATTAA pLKO_005 1641 CDS 100% 15.000 21.000 N Gk2 n/a
2 TRCN0000233998 ACGATCTTGATGGAACGATAT pLKO_005 1472 CDS 100% 10.800 15.120 N Gk2 n/a
3 TRCN0000378489 GTATGACCGGAGGAGTCAATG pLKO_005 585 CDS 100% 10.800 15.120 N Gk2 n/a
4 TRCN0000361276 TCTGCACATTCCGGTAGTTAA pLKO_005 1354 CDS 100% 13.200 10.560 N Gk2 n/a
5 TRCN0000361223 CATCCATTGCACCGATGTAAC pLKO_005 610 CDS 100% 10.800 8.640 N Gk2 n/a
6 TRCN0000025528 CAGGTGGAACTGACACAAGAA pLKO.1 149 CDS 100% 4.950 3.960 N Gk2 n/a
7 TRCN0000361226 CTGAAGTGAACATTGATATTT pLKO_005 258 CDS 100% 15.000 10.500 N Gk2 n/a
8 TRCN0000025527 GTGAGTAGCATGACGTTATTA pLKO.1 1640 CDS 100% 15.000 10.500 N Gk2 n/a
9 TRCN0000233997 CTAAGAGACAATTTCGAAATT pLKO_005 1025 CDS 100% 13.200 9.240 N Gk2 n/a
10 TRCN0000218375 GACCAACAACAGGATTCTTAT pLKO_005 1315 CDS 100% 13.200 9.240 N Gk2 n/a
11 TRCN0000025525 GCTGAAGTGAACATTGATATT pLKO.1 257 CDS 100% 13.200 9.240 N Gk2 n/a
12 TRCN0000368013 TCACCAACAAATGCCATATTG pLKO_005 1188 CDS 100% 13.200 9.240 N Gk2 n/a
13 TRCN0000218225 AGCAACTTTGTCAAGTCTAAG pLKO_005 431 CDS 100% 10.800 7.560 N Gk2 n/a
14 TRCN0000361275 TAGAAGGTTCTGTTGCTATAG pLKO_005 984 CDS 100% 10.800 7.560 N Gk2 n/a
15 TRCN0000361279 TGACCACATTGGCTTACAAAC pLKO_005 933 CDS 100% 10.800 7.560 N Gk2 n/a
16 TRCN0000025524 GCATCCATTGCACCGATGTAA pLKO.1 609 CDS 100% 5.625 3.938 N Gk2 n/a
17 TRCN0000025526 CAGGCAGATATTCTGCACATT pLKO.1 1343 CDS 100% 4.950 3.465 N Gk2 n/a
18 TRCN0000361225 CCAAGCCACAGAGAGTGAAAT pLKO_005 1504 CDS 100% 13.200 7.920 N Gk2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_010294.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.