Transcript: Mouse NM_010500.2

Mus musculus immediate early response 5 (Ier5), mRNA.

Source:
NCBI, updated 2017-04-17
Taxon:
Mus musculus (mouse)
Gene:
Ier5 (15939)
Length:
3272
CDS:
207..1133

Additional Resources:

NCBI RefSeq record:
NM_010500.2
NBCI Gene record:
Ier5 (15939)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_010500.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000248615 TTCTCGGGACTCCTACGGAAA pLKO_005 978 CDS 100% 4.050 5.670 N Ier5 n/a
2 TRCN0000248616 CCATCACTGTGGCCCAATATA pLKO_005 2648 3UTR 100% 15.000 12.000 N Ier5 n/a
3 TRCN0000161506 GACTCCAGTCTTTGTTGTATA pLKO.1 1978 3UTR 100% 13.200 9.240 N IER5 n/a
4 TRCN0000196109 GACCTAGAGTTGGAGGCTTAT pLKO.1 1325 3UTR 100% 10.800 7.560 N Ier5 n/a
5 TRCN0000248613 CTCCCTGGGCAAGATCTACAA pLKO_005 245 CDS 100% 4.950 3.465 N Ier5 n/a
6 TRCN0000248614 TCATCAGCATCTTCGGGTCTA pLKO_005 955 CDS 100% 4.050 2.835 N Ier5 n/a
7 TRCN0000248612 GAACCTCTTGGTGTCGTTGGT pLKO_005 302 CDS 100% 2.640 1.848 N Ier5 n/a
8 TRCN0000250610 CGGCATCAAGCTGCACAAGAA pLKO_005 284 CDS 100% 4.950 2.475 Y Ier5l n/a
9 TRCN0000195999 CAAGCTGCACAAGAACCTCTT pLKO.1 290 CDS 100% 4.050 2.025 Y Ier5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_010500.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.