Transcript: Mouse NM_011567.2

Mus musculus TEA domain family member 4 (Tead4), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-06-11
Taxon:
Mus musculus (mouse)
Gene:
Tead4 (21679)
Length:
3076
CDS:
570..1853

Additional Resources:

NCBI RefSeq record:
NM_011567.2
NBCI Gene record:
Tead4 (21679)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_011567.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000054773 CCGCCAAATCTATGACAAGTT pLKO.1 1349 CDS 100% 4.950 6.930 N Tead4 n/a
2 TRCN0000302370 CCGCCAAATCTATGACAAGTT pLKO_005 1349 CDS 100% 4.950 6.930 N Tead4 n/a
3 TRCN0000054776 GATGTTGGAGTTCTCGGCTTT pLKO.1 1223 CDS 100% 4.050 3.240 N Tead4 n/a
4 TRCN0000302369 GATGTTGGAGTTCTCGGCTTT pLKO_005 1223 CDS 100% 4.050 3.240 N Tead4 n/a
5 TRCN0000274171 TGGACAAGCCCATCGACAATG pLKO_005 640 CDS 100% 10.800 7.560 N TEAD4 n/a
6 TRCN0000054775 CCCTCTCTGTGAGTACATGAT pLKO.1 1640 CDS 100% 4.950 3.465 N Tead4 n/a
7 TRCN0000302367 CCCTCTCTGTGAGTACATGAT pLKO_005 1640 CDS 100% 4.950 3.465 N Tead4 n/a
8 TRCN0000054777 GACAATGATGCAGAGGGTGTA pLKO.1 654 CDS 100% 4.050 2.835 N Tead4 n/a
9 TRCN0000302366 GACAATGATGCAGAGGGTGTA pLKO_005 654 CDS 100% 4.050 2.835 N Tead4 n/a
10 TRCN0000054774 GCTGAAACACTTACCCGAGAA pLKO.1 1676 CDS 100% 4.050 2.835 N Tead4 n/a
11 TRCN0000302368 GCTGAAACACTTACCCGAGAA pLKO_005 1676 CDS 100% 4.050 2.835 N Tead4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_011567.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07045 pDONR223 100% 75.2% 80% None (many diffs) n/a
2 ccsbBroad304_07045 pLX_304 0% 75.2% 80% V5 (many diffs) n/a
3 TRCN0000467876 AGTCAGAACTTTTGAAATTTTATT pLX_317 29.2% 75.2% 80% V5 (many diffs) n/a
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