Transcript: Human NM_012117.3

Homo sapiens chromobox 5 (CBX5), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-09-26
Taxon:
Homo sapiens (human)
Gene:
CBX5 (23468)
Length:
11546
CDS:
158..733

Additional Resources:

NCBI RefSeq record:
NM_012117.3
NBCI Gene record:
CBX5 (23468)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_012117.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000062238 GCCGATGACATCAAATCTAAA pLKO.1 449 CDS 100% 13.200 18.480 N CBX5 n/a
2 TRCN0000333368 GCCGATGACATCAAATCTAAA pLKO_005 449 CDS 100% 13.200 18.480 N CBX5 n/a
3 TRCN0000344646 TATCCTAAACACATCCATAAA pLKO_005 816 3UTR 100% 13.200 10.560 N CBX5 n/a
4 TRCN0000062240 CCTGAGCTAATTTCTGAATTT pLKO.1 335 CDS 100% 13.200 9.240 N CBX5 n/a
5 TRCN0000333297 CCTGAGCTAATTTCTGAATTT pLKO_005 335 CDS 100% 13.200 9.240 N CBX5 n/a
6 TRCN0000344704 GAGAGAGCAGAGCAATGATAT pLKO_005 475 CDS 100% 13.200 9.240 N CBX5 n/a
7 TRCN0000379990 TAACAAGAGGAAATCCAATTT pLKO_005 418 CDS 100% 13.200 9.240 N CBX5 n/a
8 TRCN0000344645 CCACAAATTGTGATAGCATTT pLKO_005 638 CDS 100% 10.800 7.560 N CBX5 n/a
9 TRCN0000062239 GTGGTGATTTAATGTTCCTAA pLKO.1 555 CDS 100% 4.950 3.465 N CBX5 n/a
10 TRCN0000062241 TCCACAAATTGTGATAGCATT pLKO.1 637 CDS 100% 4.950 3.465 N CBX5 n/a
11 TRCN0000380585 AGATTCCTGTGGTGATTTAAT pLKO_005 547 CDS 100% 15.000 9.000 N CBX5 n/a
12 TRCN0000381907 AGACTGACATGGCATGCATAT pLKO_005 668 CDS 100% 10.800 6.480 N CBX5 n/a
13 TRCN0000204533 CCTCCCAAAGTGCTGGAATTA pLKO.1 4533 3UTR 100% 13.200 6.600 Y LRRC74B n/a
14 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 8797 3UTR 100% 5.625 2.813 Y KLHL30 n/a
15 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 1981 3UTR 100% 4.950 2.475 Y ERAP2 n/a
16 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 1982 3UTR 100% 13.200 6.600 Y LIAS n/a
17 TRCN0000256748 GGCAGGAGAATTGCTTGAATC pLKO_005 2012 3UTR 100% 10.800 5.400 Y SMIM11A n/a
18 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 8797 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_012117.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.