Transcript: Mouse NM_013460.4

Mus musculus adrenergic receptor, alpha 1d (Adra1d), mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Adra1d (11550)
Length:
2394
CDS:
118..1806

Additional Resources:

NCBI RefSeq record:
NM_013460.4
NBCI Gene record:
Adra1d (11550)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_013460.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000027338 AGCCATTATGACAGAACGCAA pLKO.1 714 CDS 100% 2.640 2.112 N Adra1d n/a
2 TRCN0000027342 GCAGACGGTCACCAACTATTT pLKO.1 480 CDS 100% 13.200 9.240 N Adra1d n/a
3 TRCN0000027399 GAAGCAGTGTCCCTAAATGTT pLKO.1 1705 CDS 100% 5.625 3.938 N Adra1d n/a
4 TRCN0000027332 CTACTTCAATAGCTGTGTGAA pLKO.1 1272 CDS 100% 4.950 3.465 N Adra1d n/a
5 TRCN0000027372 CTCTTCCGTATGCTCCTTCTA pLKO.1 870 CDS 100% 4.950 3.465 N Adra1d n/a
6 TRCN0000008063 CAACTATTTCATCGTGAACCT pLKO.1 492 CDS 100% 2.640 1.848 N ADRA1D n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_013460.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000488894 ACTAGAGTGGGAGCGTGAGCAAAT pLX_317 18.3% 82% 85.3% V5 (not translated due to prior stop codon) (many diffs) n/a
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