Transcript: Mouse NM_013782.4

Mus musculus phosphatidylserine synthase 2 (Ptdss2), mRNA.

Source:
NCBI, updated 2019-02-23
Taxon:
Mus musculus (mouse)
Gene:
Ptdss2 (27388)
Length:
2172
CDS:
117..1538

Additional Resources:

NCBI RefSeq record:
NM_013782.4
NBCI Gene record:
Ptdss2 (27388)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_013782.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000045800 CAAGCTAAAGACGGGCCATTT pLKO.1 381 CDS 100% 10.800 15.120 N PTDSS2 n/a
2 TRCN0000229306 CAAGCTAAAGACGGGCCATTT pLKO_005 381 CDS 100% 10.800 15.120 N PTDSS2 n/a
3 TRCN0000350003 CAAGCTAAAGACGGGCCATTT pLKO_005 381 CDS 100% 10.800 15.120 N Ptdss2 n/a
4 TRCN0000313861 TACGACTTCATGGATGAATTG pLKO_005 1146 CDS 100% 10.800 15.120 N Ptdss2 n/a
5 TRCN0000075810 CGATGGCACTAACACCTTCTT pLKO.1 209 CDS 100% 4.950 6.930 N Ptdss2 n/a
6 TRCN0000317384 CGATGGCACTAACACCTTCTT pLKO_005 209 CDS 100% 4.950 6.930 N Ptdss2 n/a
7 TRCN0000045799 GCGTGAGATCTACGACTTCAT pLKO.1 1136 CDS 100% 4.950 6.930 N PTDSS2 n/a
8 TRCN0000075811 CTACGACTTCATGGATGAATT pLKO.1 1145 CDS 100% 0.000 0.000 N Ptdss2 n/a
9 TRCN0000075812 GCTGTCCCTGAAGACATATAA pLKO.1 851 CDS 100% 15.000 10.500 N Ptdss2 n/a
10 TRCN0000313794 CTGTCCCTGAAGACATATAAG pLKO_005 852 CDS 100% 13.200 9.240 N Ptdss2 n/a
11 TRCN0000218416 TACAACACCAAGAGAGGTATT pLKO_005 321 CDS 100% 10.800 7.560 N PTDSS2 n/a
12 TRCN0000075808 CGGTACTCTTTCTCCACTCTT pLKO.1 1849 3UTR 100% 4.950 3.465 N Ptdss2 n/a
13 TRCN0000317451 CGGTACTCTTTCTCCACTCTT pLKO_005 1849 3UTR 100% 4.950 3.465 N Ptdss2 n/a
14 TRCN0000075809 GCACACTTCATTGGCTGGTAT pLKO.1 645 CDS 100% 4.950 3.465 N Ptdss2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_013782.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.