Transcript: Human NM_014009.4

Homo sapiens forkhead box P3 (FOXP3), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-31
Taxon:
Homo sapiens (human)
Gene:
FOXP3 (50943)
Length:
2264
CDS:
73..1368

Additional Resources:

NCBI RefSeq record:
NM_014009.4
NBCI Gene record:
FOXP3 (50943)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_014009.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000367910 AGCTGGAGTTCCGCAAGAAAC pLKO_005 1301 CDS 100% 10.800 7.560 N FOXP3 n/a
2 TRCN0000358518 TCCTACCCACTGCTGGCAAAT pLKO_005 640 CDS 100% 10.800 7.560 N FOXP3 n/a
3 TRCN0000367825 TGTCCCTCACTCAACACAAAC pLKO_005 1744 3UTR 100% 10.800 7.560 N FOXP3 n/a
4 TRCN0000018960 CACACGCATGTTTGCCTTCTT pLKO.1 1173 CDS 100% 4.950 3.465 N FOXP3 n/a
5 TRCN0000018959 CCTCCACAACATGGACTACTT pLKO.1 1044 CDS 100% 4.950 3.465 N FOXP3 n/a
6 TRCN0000018962 CTGAGTCTGCACAAGTGCTTT pLKO.1 1237 CDS 100% 4.950 3.465 N FOXP3 n/a
7 TRCN0000358519 TCCACAACATGGACTACTTCA pLKO_005 1046 CDS 100% 4.950 3.465 N FOXP3 n/a
8 TRCN0000018961 GCTGGCAAATGGTGTCTGCAA pLKO.1 651 CDS 100% 2.640 1.848 N FOXP3 n/a
9 TRCN0000018963 GCCCGGATGTGAGAAGGTCTT pLKO.1 675 CDS 100% 1.350 0.945 N FOXP3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_014009.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03161 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_03161 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000468197 TAGCGCTGGATATGCCGGGCACCA pLX_317 21.3% 100% 100% V5 n/a
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