Transcript: Human NM_015050.3

Homo sapiens cap methyltransferase 1 (CMTR1), mRNA.

Source:
NCBI, updated 2019-09-03
Taxon:
Homo sapiens (human)
Gene:
CMTR1 (23070)
Length:
4034
CDS:
164..2671

Additional Resources:

NCBI RefSeq record:
NM_015050.3
NBCI Gene record:
CMTR1 (23070)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_015050.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000121932 CGACCCTAAATCGAAGTTCTT pLKO.1 1819 CDS 100% 4.950 6.930 N CMTR1 n/a
2 TRCN0000141195 CGTTAAGTGGTCACTCCCATT pLKO.1 3671 3UTR 100% 4.050 5.670 N CMTR1 n/a
3 TRCN0000297447 CGTTAAGTGGTCACTCCCATT pLKO_005 3671 3UTR 100% 4.050 5.670 N CMTR1 n/a
4 TRCN0000141341 GCAGCACTTTAACCAGCGAAT pLKO.1 2182 CDS 100% 4.050 5.670 N CMTR1 n/a
5 TRCN0000143867 GCATAGATGATGTTCGGGATT pLKO.1 1518 CDS 100% 4.050 5.670 N CMTR1 n/a
6 TRCN0000278424 GCATAGATGATGTTCGGGATT pLKO_005 1518 CDS 100% 4.050 5.670 N CMTR1 n/a
7 TRCN0000142265 GCCAGGAGAACCTGCTATAAA pLKO.1 3139 3UTR 100% 15.000 10.500 N CMTR1 n/a
8 TRCN0000319262 GCCAGGAGAACCTGCTATAAA pLKO_005 3139 3UTR 100% 15.000 10.500 N CMTR1 n/a
9 TRCN0000143756 CAAAGGGCTTTGGAATGACTT pLKO.1 1047 CDS 100% 4.950 3.465 N CMTR1 n/a
10 TRCN0000143281 GATGCCAAATTGGAGACCATT pLKO.1 3198 3UTR 100% 4.950 3.465 N CMTR1 n/a
11 TRCN0000297448 GATGCCAAATTGGAGACCATT pLKO_005 3198 3UTR 100% 4.950 3.465 N CMTR1 n/a
12 TRCN0000142480 GCAGTGTAAGAGCGTGTTTGA pLKO.1 763 CDS 100% 4.950 3.465 N CMTR1 n/a
13 TRCN0000141944 GCATGCAAAGGGCTTTGGAAT pLKO.1 1042 CDS 100% 4.950 3.465 N CMTR1 n/a
14 TRCN0000278423 GCATGCAAAGGGCTTTGGAAT pLKO_005 1042 CDS 100% 4.950 3.465 N CMTR1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_015050.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.