Transcript: Mouse NM_015796.2

Mus musculus F-box protein 17 (Fbxo17), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-06-11
Taxon:
Mus musculus (mouse)
Gene:
Fbxo17 (50760)
Length:
1984
CDS:
450..1310

Additional Resources:

NCBI RefSeq record:
NM_015796.2
NBCI Gene record:
Fbxo17 (50760)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_015796.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000087389 GTTCGCCTACTGGATGAATAT pLKO.1 1074 CDS 100% 13.200 18.480 N Fbxo17 n/a
2 TRCN0000087392 CCGTGAGAACTGCGGCTGCAT pLKO.1 1040 CDS 100% 0.000 0.000 N Fbxo17 n/a
3 TRCN0000182716 CCTGAGTTCAATTCCCAGCAA pLKO.1 1838 3UTR 100% 2.640 1.320 Y BC028528 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_015796.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09415 pDONR223 100% 81.1% 83.9% None (many diffs) n/a
2 ccsbBroad304_09415 pLX_304 0% 81.1% 83.9% V5 (many diffs) n/a
3 TRCN0000491792 GAGGTACCACATCTCCATCGTGGA pLX_317 47.3% 81.1% 83.9% V5 (many diffs) n/a
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