Transcript: Human NM_016333.4

Homo sapiens serine/arginine repetitive matrix 2 (SRRM2), mRNA.

Source:
NCBI, updated 2019-07-06
Taxon:
Homo sapiens (human)
Gene:
SRRM2 (23524)
Length:
9044
CDS:
241..8499

Additional Resources:

NCBI RefSeq record:
NM_016333.4
NBCI Gene record:
SRRM2 (23524)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_016333.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000314504 GTTGGGACTGGAGGTTGTATA pLKO_005 8850 3UTR 100% 13.200 18.480 N SRRM2 n/a
2 TRCN0000000176 CGCCACCTAAACAGAAATCTA pLKO.1 2702 CDS 100% 5.625 7.875 N SRRM2 n/a
3 TRCN0000130685 CGCCACCTAAACAGAAATCTA pLKO.1 2702 CDS 100% 5.625 7.875 N SRRM2 n/a
4 TRCN0000314502 CGCCACCTAAACAGAAATCTA pLKO_005 2702 CDS 100% 5.625 7.875 N SRRM2 n/a
5 TRCN0000127614 CCGTTTCTTAATCAGCTGGAA pLKO.1 4312 CDS 100% 2.640 3.696 N SRRM2 n/a
6 TRCN0000350298 CCGTTTCTTAATCAGCTGGAA pLKO_005 4312 CDS 100% 2.640 3.696 N SRRM2 n/a
7 TRCN0000000177 CCCAAAGTGAAGGCAATAATA pLKO.1 2989 CDS 100% 15.000 10.500 N SRRM2 n/a
8 TRCN0000314562 CCCAAAGTGAAGGCAATAATA pLKO_005 2989 CDS 100% 15.000 10.500 N SRRM2 n/a
9 TRCN0000130209 CCCAACCTAAAGCTAAATCTA pLKO.1 2645 CDS 100% 5.625 3.938 N SRRM2 n/a
10 TRCN0000130672 CATCTCCAGTAACTCGAAGAA pLKO.1 6233 CDS 100% 4.950 3.465 N SRRM2 n/a
11 TRCN0000128070 GCTGTGTCTTTGACTCTTGAT pLKO.1 4075 CDS 100% 4.950 3.465 N SRRM2 n/a
12 TRCN0000000175 CTGGAGGTTGTATAAGGTGTT pLKO.1 8857 3UTR 100% 4.050 2.835 N SRRM2 n/a
13 TRCN0000000178 GAAGAGTTAATGGAGGTGGTA pLKO.1 3946 CDS 100% 2.640 1.848 N SRRM2 n/a
14 TRCN0000130321 GCCCTTATGAAGACAAAGATA pLKO.1 1238 CDS 100% 5.625 3.375 N SRRM2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_016333.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.