Transcript: Human NM_016506.6

Homo sapiens kelch repeat and BTB domain containing 4 (KBTBD4), transcript variant 2, mRNA.

Source:
NCBI, updated 2018-07-01
Taxon:
Homo sapiens (human)
Gene:
KBTBD4 (55709)
Length:
2526
CDS:
218..1774

Additional Resources:

NCBI RefSeq record:
NM_016506.6
NBCI Gene record:
KBTBD4 (55709)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_016506.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000413639 TGTCTTCCGGGACCGATATAA pLKO_005 1648 CDS 100% 15.000 21.000 N KBTBD4 n/a
2 TRCN0000431951 GCATGTGGAAGTGCAACAATG pLKO_005 1107 CDS 100% 10.800 15.120 N KBTBD4 n/a
3 TRCN0000144516 CTTTCAAAGATCGGTCACATT pLKO.1 276 CDS 100% 4.950 6.930 N KBTBD4 n/a
4 TRCN0000139228 CCGATCCATGTTCACTTCCAA pLKO.1 427 CDS 100% 3.000 4.200 N KBTBD4 n/a
5 TRCN0000416631 GACTAAGCTGAAGGTGTACTT pLKO_005 2237 3UTR 100% 4.950 3.960 N KBTBD4 n/a
6 TRCN0000144852 GAAGCCTGGATCAACTTTAAT pLKO.1 845 CDS 100% 15.000 10.500 N KBTBD4 n/a
7 TRCN0000433383 CCACAAAGAATTAGGTGTTAA pLKO_005 2184 3UTR 100% 13.200 9.240 N KBTBD4 n/a
8 TRCN0000145110 GCTCCTGGTTGATTATATCTA pLKO.1 508 CDS 100% 5.625 3.938 N KBTBD4 n/a
9 TRCN0000141375 GAGGTATTAAGGTGCTGCTTA pLKO.1 1728 CDS 100% 4.950 3.465 N KBTBD4 n/a
10 TRCN0000142565 GCTGCTTACCAATTTGCAGTT pLKO.1 1741 CDS 100% 4.050 2.835 N KBTBD4 n/a
11 TRCN0000141254 CGCAGTCATTTATTATCGCGT pLKO.1 1255 CDS 100% 0.660 0.462 N KBTBD4 n/a
12 TRCN0000140781 GCTTGCTTAGAGCAAGCCTTT pLKO.1 2026 3UTR 100% 0.405 0.284 N KBTBD4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_016506.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03635 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_03635 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000471095 GTCGCTACTGCAAACCAGACACGG pLX_317 30.4% 100% 100% V5 n/a
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