Construct: ORF TRCN0000471095

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001309.1_s317c1
Derived from:
ccsbBroadEn_03635
DNA Barcode:
GTCGCTACTGCAAACCAGACACGG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KBTBD4 (55709)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471095
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55709 KBTBD4 kelch repeat and BTB domain... NM_001318721.1 100% 100%
2 human 55709 KBTBD4 kelch repeat and BTB domain... NM_001318722.1 100% 100%
3 human 55709 KBTBD4 kelch repeat and BTB domain... NM_001318723.1 100% 100%
4 human 55709 KBTBD4 kelch repeat and BTB domain... NM_001318724.1 100% 100%
5 human 55709 KBTBD4 kelch repeat and BTB domain... NM_001318725.1 100% 100%
6 human 55709 KBTBD4 kelch repeat and BTB domain... NM_016506.6 100% 100%
7 human 55709 KBTBD4 kelch repeat and BTB domain... NM_018095.6 97% 97% 1_48del
8 human 55709 KBTBD4 kelch repeat and BTB domain... NM_001318720.1 95.7% 95.7% 1_69del
9 human 55709 KBTBD4 kelch repeat and BTB domain... NM_001318718.1 95.3% 95.3% 1_75del
10 human 55709 KBTBD4 kelch repeat and BTB domain... NM_001318719.1 95.3% 95.3% 1_75del
11 human 55709 KBTBD4 kelch repeat and BTB domain... XM_017018009.1 94.1% 94.1% 1_96del
12 human 55709 KBTBD4 kelch repeat and BTB domain... NM_001318717.1 92.9% 92.9% 1_117del
13 human 55709 KBTBD4 kelch repeat and BTB domain... NM_001318716.1 91.3% 91.3% 1_147del
14 mouse 67136 Kbtbd4 kelch repeat and BTB (POZ) ... NM_025991.3 91.7% 99.4% (many diffs)
15 mouse 67136 Kbtbd4 kelch repeat and BTB (POZ) ... XM_017319215.1 91.7% 99.4% (many diffs)
16 mouse 67136 Kbtbd4 kelch repeat and BTB (POZ) ... NM_001311116.1 89% 96.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1620
ORF length:
1554
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga atcaccagag gagcctggag catccatgga tgagaactac tttgtgaact
121acactttcaa agatcggtca cattcaggcc gtgtggctca aggcatcatg aaactgtgtc
181tagaggagga gctctttgct gatgtcacca tttcggtgga aggccgggag tttcagctcc
241atcggctggt cctctcagct cagagctgct tcttccgatc catgttcact tccaacctga
301aggaggccca caaccgggtg attgtgctgc aggatgtcag cgagtctgtt ttccagctcc
361tggttgatta tatctaccat gggactgtga aacttcgagc tgaggagttg caggaaattt
421atgaggtgtc agacatgtat cagctgacat ctctctttga ggaatgctct cggtttttgg
481cccgcacagt gcaagtggga aactgccttc aggtgatgtg gctggcagat cggcacagtg
541atcctgagct ctatacggct gccaagcact gtgccaagac ccacctggcc cagctgcaga
601atacagagga atttctccac ttgccccacc gcttactcac agatatcatc tcggatggag
661ttccgtgttc tcagaaccca acagaggcaa tagaagcctg gatcaacttt aataaagagg
721aaagagaggc ttttgcagag tcactcagga caagcttgaa ggaaattggg gagaatgtgc
781acatttacct gattgggaaa gagtcatctc gtacccactc gttggctgtg tccttgcact
841gtgcagaaga tgactccatc agtgtaagtg gccaaaacag tttgtgccac cagatcactg
901cggcctgcaa gcatggtgga gacttgtatg tggtgggagg gtccatccca cggcgcatgt
961ggaagtgcaa caatgccacc gttgactggg agtggtgtgc tcctttgcct cgggaccggc
1021tccagcacac cctggtgtct gtgcccggga aagatgccat atattcactg ggtggcaaga
1081cactgcaaga taccctctcc aacgcagtca tttattatcg cgtaggtgat aatgtgtgga
1141cagagacaac TCAGCTAGAG GTGGCTGTGT CAGGGGCTGC TGGTGCCAAC CTCAACGGGA
1201TCATCTACTT ACTAGGGGGG GAGGAGAATG ATCTGGACTT CTTTACCAAA CCTTCCCGAC
1261TCATCCAGTG CTTTGACACA GAGACAGACA AATGCCATGT GAAGCCCTAT GTGCTGCCCT
1321TTGCAGGCCG CATGCACGCA GCTGTGCATA AAGATCTGGT GTTCATCGTG GCTGAAGGGG
1381ACTCCCTGGT GTGCTACAAT CCCTTGCTAG ACAGCTTCAC CCGGCTTTGC CTTCCTGAGG
1441CCTGGAGCTC TGCCCCATCC CTCTGGAAGA TTGCCAGCTG TAACGGGAGC ATCTATGTCT
1501TCCGGGACCG ATATAAAAAG GGGGATGCCA ACACCTACAA GCTTGACCCT GCCACTTCAG
1561CCGTAACTGT CACAAGAGGT ATTAAGGTGC TGCTTACCAA TTTGCAGTTT GTGTTGGCCT
1621ACCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
1681GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
1741TTTATATATC TTGTGGAAAG GACGAGTCGC TACTGCAAAC CAGACACGGA CGCGTTAAGT
1801Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)

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