Transcript: Mouse NM_016892.3

Mus musculus copper chaperone for superoxide dismutase (Ccs), mRNA.

Source:
NCBI, updated 2017-05-14
Taxon:
Mus musculus (mouse)
Gene:
Ccs (12460)
Length:
1057
CDS:
88..912

Additional Resources:

NCBI RefSeq record:
NM_016892.3
NBCI Gene record:
Ccs (12460)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_016892.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000305351 ACCTTCCGGATAGAGGATAAA pLKO_005 625 CDS 100% 13.200 18.480 N Ccs n/a
2 TRCN0000101230 CAGAGCCTCATGTCAGGTTAT pLKO.1 914 3UTR 100% 10.800 8.640 N Ccs n/a
3 TRCN0000309764 CAGAGCCTCATGTCAGGTTAT pLKO_005 914 3UTR 100% 10.800 8.640 N Ccs n/a
4 TRCN0000305350 GGTATGGGCAGTAGCCAATTA pLKO_005 316 CDS 100% 13.200 9.240 N Ccs n/a
5 TRCN0000101232 AGGTACAAGCACTCCTGGAAA pLKO.1 269 CDS 100% 4.950 3.465 N Ccs n/a
6 TRCN0000049081 GCCATCCCTTATCCAAGATCA pLKO.1 719 CDS 100% 4.950 3.465 N CCS n/a
7 TRCN0000421757 GGTTGGCCTGTGGCATCATTG pLKO_005 758 CDS 100% 3.600 2.520 N CCS n/a
8 TRCN0000101233 CTGCTTGATTGAGGGAACCAT pLKO.1 423 CDS 100% 3.000 2.100 N Ccs n/a
9 TRCN0000309766 CTGCTTGATTGAGGGAACCAT pLKO_005 423 CDS 100% 3.000 2.100 N Ccs n/a
10 TRCN0000101231 CTTATCCAAGATCACAGGGAA pLKO.1 726 CDS 100% 2.640 1.848 N Ccs n/a
11 TRCN0000101234 CCAGAATGTGGACGTTCAGTT pLKO.1 204 CDS 100% 4.950 2.970 N Ccs n/a
12 TRCN0000309765 CCAGAATGTGGACGTTCAGTT pLKO_005 204 CDS 100% 4.950 2.970 N Ccs n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_016892.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.