Transcript: Human NM_017659.4

Homo sapiens glutaminyl-peptide cyclotransferase like (QPCTL), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-05-14
Taxon:
Homo sapiens (human)
Gene:
QPCTL (54814)
Length:
2125
CDS:
39..1187

Additional Resources:

NCBI RefSeq record:
NM_017659.4
NBCI Gene record:
QPCTL (54814)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_017659.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000222565 CGGGAAATCTCCAAGTCAGAA pLKO.1 367 CDS 100% 4.950 6.930 N QPCTL n/a
2 TRCN0000073955 CCATTATGACTCGAAGCTCTT pLKO.1 539 CDS 100% 4.050 5.670 N QPCTL n/a
3 TRCN0000417901 GAAGCGTCTGCACCGTTTGAA pLKO_005 926 CDS 100% 5.625 4.500 N QPCTL n/a
4 TRCN0000073957 CCAGGCTATTGAGCTCTTTAT pLKO.1 815 CDS 100% 13.200 9.240 N QPCTL n/a
5 TRCN0000425696 CGCTGTGTTCCTGGCTGAATA pLKO_005 1154 CDS 100% 13.200 9.240 N QPCTL n/a
6 TRCN0000222566 TCCAGGCTATTGAGCTCTTTA pLKO.1 814 CDS 100% 13.200 9.240 N QPCTL n/a
7 TRCN0000073953 GTCTCCTAATTGTGCTACAAT pLKO.1 1302 3UTR 100% 5.625 3.938 N QPCTL n/a
8 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 1724 3UTR 100% 5.625 2.813 Y KLHL30 n/a
9 TRCN0000264189 CAAGTAGCTGGGACTACAGGA pLKO_005 1593 3UTR 100% 2.640 1.320 Y LINC01098 n/a
10 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 1724 3UTR 100% 5.625 2.813 Y EID2B n/a
11 TRCN0000107105 CGAGGTCAGGAGTTTGAGATT pLKO.1 1874 3UTR 100% 4.950 2.475 Y NLRP12 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_017659.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08412 pDONR223 100% 75.3% 75.3% None 350_631del;1104G>A n/a
2 ccsbBroad304_08412 pLX_304 0% 75.3% 75.3% V5 350_631del;1104G>A n/a
3 TRCN0000471299 AACGTCATTCTCGCCCCTCACAAA pLX_317 51.3% 75.3% 75.3% V5 350_631del;1104G>A n/a
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