Transcript: Human NM_017753.3

Homo sapiens phospholipid phosphatase related 1 (PLPPR1), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-29
Taxon:
Homo sapiens (human)
Gene:
PLPPR1 (54886)
Length:
2322
CDS:
267..1244

Additional Resources:

NCBI RefSeq record:
NM_017753.3
NBCI Gene record:
PLPPR1 (54886)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_017753.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000359525 CCTTATATGCCACGATGTATA pLKO_005 889 CDS 100% 13.200 18.480 N PLPPR1 n/a
2 TRCN0000359526 TGCGTCCATGACCGAAGTTAC pLKO_005 1220 CDS 100% 10.800 15.120 N PLPPR1 n/a
3 TRCN0000444504 GCTTGCCTACTACTTCGAATG pLKO_005 356 CDS 100% 6.000 8.400 N Plppr1 n/a
4 TRCN0000050423 CGCCTTATATGCCACGATGTA pLKO.1 887 CDS 100% 4.950 6.930 N PLPPR1 n/a
5 TRCN0000050425 CGGAGACTTAATGAAGCCTTA pLKO.1 422 CDS 100% 4.050 5.670 N PLPPR1 n/a
6 TRCN0000050426 CTGAGCATTTACTCCGCCTTA pLKO.1 873 CDS 100% 4.050 3.240 N PLPPR1 n/a
7 TRCN0000359524 CAAGCGCACCACCAGTTTATA pLKO_005 774 CDS 100% 15.000 10.500 N PLPPR1 n/a
8 TRCN0000359523 CCTTACTTCGAAGGATCATAA pLKO_005 622 CDS 100% 13.200 9.240 N PLPPR1 n/a
9 TRCN0000050427 GAAAGCCCTCTGGAAACCTTA pLKO.1 1182 CDS 100% 4.950 3.465 N PLPPR1 n/a
10 TRCN0000050424 CGGAGAATGCTGTTACCTGAA pLKO.1 599 CDS 100% 4.050 2.835 N PLPPR1 n/a
11 TRCN0000081322 CCAAGGATTCTTCTGTCAGGA pLKO.1 401 CDS 100% 2.640 1.848 N Plppr1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_017753.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03474 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_03474 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000469847 GAGTAGGCTCCAAAGGCCGCCGCT pLX_317 36.3% 100% 100% V5 n/a
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