Transcript: Human NM_017885.4

Homo sapiens host cell factor C1 regulator 1 (HCFC1R1), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-15
Taxon:
Homo sapiens (human)
Gene:
HCFC1R1 (54985)
Length:
656
CDS:
2..418

Additional Resources:

NCBI RefSeq record:
NM_017885.4
NBCI Gene record:
HCFC1R1 (54985)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_017885.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000242882 TCTGCGCAAGCAGTTTCTGTC pLKO_005 160 CDS 100% 4.050 3.240 N HCFC1R1 n/a
2 TRCN0000242880 GACATAATGGAGCTCTGAGTG pLKO_005 401 CDS 100% 4.050 2.835 N HCFC1R1 n/a
3 TRCN0000242879 TTGCTCTGAGCTGCTTCTCTG pLKO_005 289 CDS 100% 4.050 2.835 N HCFC1R1 n/a
4 TRCN0000242881 ACAACAGAAGAGACCAGCGAC pLKO_005 459 3UTR 100% 2.160 1.512 N HCFC1R1 n/a
5 TRCN0000242883 CTCAACTCAGCCTGCACAATG pLKO_005 207 CDS 100% 10.800 6.480 N HCFC1R1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_017885.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08441 pDONR223 100% 85.9% 84.7% None 96_152del;275C>A n/a
2 ccsbBroad304_08441 pLX_304 0% 85.9% 84.7% V5 96_152del;275C>A n/a
3 TRCN0000465473 CCCTCCAGGCTGTGCGCTCCAAGG pLX_317 18.5% 85.9% 84.7% V5 96_152del;275C>A n/a
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