Transcript: Human NM_017915.4

Homo sapiens PARP1 binding protein (PARPBP), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-07-23
Taxon:
Homo sapiens (human)
Gene:
PARPBP (55010)
Length:
3105
CDS:
120..1859

Additional Resources:

NCBI RefSeq record:
NM_017915.4
NBCI Gene record:
PARPBP (55010)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_017915.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000431988 CTCCTCCCATTGGCAATTAAA pLKO_005 2156 3UTR 100% 15.000 21.000 N PARPBP n/a
2 TRCN0000432818 AGTAAATACAACCGTGATAAT pLKO_005 588 CDS 100% 13.200 18.480 N PARPBP n/a
3 TRCN0000432356 CATCATCATGGAACGTCTATT pLKO_005 1269 CDS 100% 13.200 10.560 N PARPBP n/a
4 TRCN0000167915 CCATTCACCAAAGACATGCTT pLKO.1 1899 3UTR 100% 3.000 2.400 N PARPBP n/a
5 TRCN0000167549 GATACTGTGAAAGCCTTATTA pLKO.1 1170 CDS 100% 15.000 10.500 N PARPBP n/a
6 TRCN0000434481 GACCTTTCTGAGGGTGTAAAT pLKO_005 1509 CDS 100% 13.200 9.240 N PARPBP n/a
7 TRCN0000167104 CAAACTAGCTAAAGTAGCAAA pLKO.1 1766 CDS 100% 4.950 3.465 N PARPBP n/a
8 TRCN0000168712 GAGGGTGTAAATCCATCTGTT pLKO.1 1518 CDS 100% 4.950 3.465 N PARPBP n/a
9 TRCN0000149356 GCCTGTGTTCTGTAAAGAGAA pLKO.1 2731 3UTR 100% 4.950 2.475 Y PMCHL2 n/a
10 TRCN0000153159 GCCTGTGTTCTGTAAAGAGAA pLKO.1 2731 3UTR 100% 4.950 2.475 Y PMCHL1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_017915.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12133 pDONR223 100% 50.7% 50.6% None 1_855del;965G>C n/a
2 ccsbBroad304_12133 pLX_304 0% 50.7% 50.6% V5 1_855del;965G>C n/a
3 TRCN0000480593 CCAACCCAGCCGAAGGGAAAAAAG pLX_317 37.4% 50.7% 50.6% V5 1_855del;965G>C n/a
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