Transcript: Human NM_018036.7

Homo sapiens autophagy related 2B (ATG2B), mRNA.

Source:
NCBI, updated 2019-08-02
Taxon:
Homo sapiens (human)
Gene:
ATG2B (55102)
Length:
13162
CDS:
366..6602

Additional Resources:

NCBI RefSeq record:
NM_018036.7
NBCI Gene record:
ATG2B (55102)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_018036.7, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000365241 CTGGTTGGAACCTACTATTTA pLKO_005 3788 CDS 100% 15.000 21.000 N ATG2B n/a
2 TRCN0000127949 CCACGAGACATGGACGTAATA pLKO.1 5128 CDS 100% 13.200 18.480 N ATG2B n/a
3 TRCN0000150114 CAGTAAAGAAATGCCTCGAAA pLKO.1 5366 CDS 100% 4.950 6.930 N ATG2B n/a
4 TRCN0000149613 GCGATGTTGTCCATATCAGAA pLKO.1 4387 CDS 100% 4.950 6.930 N ATG2B n/a
5 TRCN0000130624 CTGCCCGTTAATAAGACCGAT pLKO.1 4944 CDS 100% 2.640 3.696 N ATG2B n/a
6 TRCN0000336214 ATGGAATTAAACCGGTATTAT pLKO_005 1467 CDS 100% 15.000 12.000 N Atg2b n/a
7 TRCN0000365229 ATGGAATTAAACCGGTATTAT pLKO_005 1467 CDS 100% 15.000 12.000 N ATG2B n/a
8 TRCN0000370306 ATGGACCTTGAGTTATCATTA pLKO_005 1656 CDS 100% 13.200 10.560 N ATG2B n/a
9 TRCN0000365240 ATGCAATACTGTCACTATAAA pLKO_005 4247 CDS 100% 15.000 10.500 N ATG2B n/a
10 TRCN0000370305 GAAACGTCACAGAACCTTAAT pLKO_005 1947 CDS 100% 13.200 9.240 N ATG2B n/a
11 TRCN0000370361 TCTGACATTTATAGTTGATAC pLKO_005 6768 3UTR 100% 10.800 7.560 N ATG2B n/a
12 TRCN0000128821 GATCTCTTCTTACCGTGGAAA pLKO.1 4135 CDS 100% 4.950 3.465 N ATG2B n/a
13 TRCN0000149504 GCAGACATGTTCTGTTGTGTT pLKO.1 7172 3UTR 100% 4.950 3.465 N ATG2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_018036.7, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12156 pDONR223 100% 34.7% 34.6% None 1_4068del;4700T>C n/a
2 ccsbBroad304_12156 pLX_304 0% 34.7% 34.6% V5 1_4068del;4700T>C n/a
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