Transcript: Human NM_018557.3

Homo sapiens LDL receptor related protein 1B (LRP1B), mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
LRP1B (53353)
Length:
15850
CDS:
288..14087

Additional Resources:

NCBI RefSeq record:
NM_018557.3
NBCI Gene record:
LRP1B (53353)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_018557.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000119608 GCCACCACTATTGTGTGAATT pLKO.1 13261 CDS 100% 0.000 0.000 N Lrp1b n/a
2 TRCN0000449157 ATGTGTACAGTGGGATATTAT pLKO_005 5865 CDS 100% 15.000 10.500 N Lrp1b n/a
3 TRCN0000054131 CCAGAAATGTATCCCAGTAAA pLKO.1 10505 CDS 100% 13.200 9.240 N LRP1B n/a
4 TRCN0000054129 CCCTGATATGTGTGTCAAATT pLKO.1 11405 CDS 100% 13.200 9.240 N LRP1B n/a
5 TRCN0000054130 GCTGTAAAGATCAAGATGAAT pLKO.1 742 CDS 100% 5.625 3.938 N LRP1B n/a
6 TRCN0000054128 CGGCATTTACAGTCCCTGATA pLKO.1 5080 CDS 100% 4.950 3.465 N LRP1B n/a
7 TRCN0000054132 CGAGTCAATGAAAGAAGAATT pLKO.1 5597 CDS 100% 0.000 0.000 N LRP1B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_018557.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.