Transcript: Human NM_018559.5

Homo sapiens GPALPP motifs containing 1 (GPALPP1), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-31
Taxon:
Homo sapiens (human)
Gene:
GPALPP1 (55425)
Length:
3442
CDS:
118..1140

Additional Resources:

NCBI RefSeq record:
NM_018559.5
NBCI Gene record:
GPALPP1 (55425)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_018559.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000264350 ATACCATTTGACCGTGATAAA pLKO_005 1012 CDS 100% 13.200 18.480 N Gpalpp1 n/a
2 TRCN0000134800 CTCAAGGTTAATCGGTTTGAT pLKO.1 1036 CDS 100% 5.625 7.875 N GPALPP1 n/a
3 TRCN0000134564 GATCTCAAGGTTAATCGGTTT pLKO.1 1033 CDS 100% 4.050 5.670 N GPALPP1 n/a
4 TRCN0000134582 GAATACCATTTGACCGTGATA pLKO.1 1010 CDS 100% 4.950 3.960 N GPALPP1 n/a
5 TRCN0000216626 GATAAAGATCTCAAGGTTAAT pLKO.1 1027 CDS 100% 13.200 9.240 N Gpalpp1 n/a
6 TRCN0000416813 TCACACGGCAAAGGCAATATG pLKO_005 1111 CDS 100% 13.200 9.240 N GPALPP1 n/a
7 TRCN0000425277 ACATCTGGAGATCGATCAATC pLKO_005 763 CDS 100% 10.800 7.560 N GPALPP1 n/a
8 TRCN0000133765 CCTCCAGAAATGAAAGACTTT pLKO.1 703 CDS 100% 4.950 3.465 N GPALPP1 n/a
9 TRCN0000136486 CAGGATGATGACGATGATGAT pLKO.1 355 CDS 100% 4.950 2.970 N GPALPP1 n/a
10 TRCN0000007228 CACCTGTAATCCCAGCACTTT pLKO.1 1924 3UTR 100% 4.950 2.475 Y CFLAR n/a
11 TRCN0000166635 CACCTGTAATCCCAGCACTTT pLKO.1 1924 3UTR 100% 4.950 2.475 Y C19orf31 n/a
12 TRCN0000074123 CGCCTGTAATCCCAACACTTT pLKO.1 1638 3UTR 100% 4.950 2.475 Y GJD4 n/a
13 TRCN0000166650 CGCCTGTAATCCCAACACTTT pLKO.1 1638 3UTR 100% 4.950 2.475 Y C9orf85 n/a
14 TRCN0000256748 GGCAGGAGAATTGCTTGAATC pLKO_005 2098 3UTR 100% 10.800 5.400 Y SMIM11A n/a
15 TRCN0000021429 CACACCTGTAATCCCAGCATT pLKO.1 1922 3UTR 100% 4.950 2.475 Y ERN2 n/a
16 TRCN0000138998 CACACCTGTAATCCCAGCATT pLKO.1 1922 3UTR 100% 4.950 2.475 Y P3H4 n/a
17 TRCN0000344020 CACACCTGTAATCCCAGCATT pLKO_005 1922 3UTR 100% 4.950 2.475 Y P3H4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_018559.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.