Transcript: Mouse NM_019990.4

Mus musculus START domain containing 10 (Stard10), mRNA.

Source:
NCBI, updated 2017-06-26
Taxon:
Mus musculus (mouse)
Gene:
Stard10 (56018)
Length:
1198
CDS:
148..1023

Additional Resources:

NCBI RefSeq record:
NM_019990.4
NBCI Gene record:
Stard10 (56018)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_019990.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000105064 ACTCAGTGAAACACCCTAAAT pLKO.1 590 CDS 100% 13.200 9.240 N Stard10 n/a
2 TRCN0000349194 ACTCAGTGAAACACCCTAAAT pLKO_005 590 CDS 100% 13.200 9.240 N Stard10 n/a
3 TRCN0000105060 CGCTGATTACATCATTATGAA pLKO.1 567 CDS 100% 5.625 3.938 N Stard10 n/a
4 TRCN0000316766 CGCTGATTACATCATTATGAA pLKO_005 567 CDS 100% 5.625 3.938 N Stard10 n/a
5 TRCN0000105062 CCTGAAGAACCGTGATGTCAT pLKO.1 519 CDS 100% 4.950 3.465 N Stard10 n/a
6 TRCN0000156337 CCTGAAGAACCGTGATGTCAT pLKO.1 519 CDS 100% 4.950 3.465 N STARD10 n/a
7 TRCN0000316695 CCTGAAGAACCGTGATGTCAT pLKO_005 519 CDS 100% 4.950 3.465 N Stard10 n/a
8 TRCN0000105061 GCATGACATAGAATACAGAAA pLKO.1 405 CDS 100% 4.950 3.465 N Stard10 n/a
9 TRCN0000316765 GCATGACATAGAATACAGAAA pLKO_005 405 CDS 100% 4.950 3.465 N Stard10 n/a
10 TRCN0000105063 AGAAAGAAGTGGGACAGTAAT pLKO.1 421 CDS 100% 13.200 7.920 N Stard10 n/a
11 TRCN0000316764 AGAAAGAAGTGGGACAGTAAT pLKO_005 421 CDS 100% 13.200 7.920 N Stard10 n/a
12 TRCN0000154633 CAAGGCCATGAAGAAGATGTA pLKO.1 774 CDS 100% 4.950 2.970 N STARD10 n/a
13 TRCN0000157910 CCCAAGTGGGTGGTGAATAAA pLKO.1 733 CDS 100% 15.000 10.500 N STARD10 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_019990.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02532 pDONR223 100% 91.1% 97.2% None (many diffs) n/a
2 ccsbBroad304_02532 pLX_304 0% 91.1% 97.2% V5 (many diffs) n/a
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