Transcript: Human NM_020678.4

Homo sapiens leucine rich repeats and transmembrane domains 1 (LRTM1), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-05-02
Taxon:
Homo sapiens (human)
Gene:
LRTM1 (57408)
Length:
1414
CDS:
149..1186

Additional Resources:

NCBI RefSeq record:
NM_020678.4
NBCI Gene record:
LRTM1 (57408)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_020678.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000138798 GCCGAAATCCCTTCCCATTTA pLKO.1 272 CDS 100% 13.200 10.560 N LRTM1 n/a
2 TRCN0000426476 TCTTGGAGTGCGAGCTCAAAC pLKO_005 951 CDS 100% 10.800 8.640 N LRTM1 n/a
3 TRCN0000167366 GCTTGATTTGTCATCAAACAA pLKO.1 526 CDS 100% 0.563 0.450 N LRTM1 n/a
4 TRCN0000167499 GCTGGAGAAATTTGTCTATAA pLKO.1 730 CDS 100% 13.200 9.240 N LRTM1 n/a
5 TRCN0000167365 GAACGCTGCATTTACAAGATA pLKO.1 306 CDS 100% 5.625 3.938 N LRTM1 n/a
6 TRCN0000137878 CAGACGGCATCATCTGTGAAT pLKO.1 762 CDS 100% 4.950 3.465 N LRTM1 n/a
7 TRCN0000424086 TGTTACTGTCAGTCATCTACA pLKO_005 221 CDS 100% 4.950 3.465 N LRTM1 n/a
8 TRCN0000138365 CCTCTGGAAATGCAATTGCCA pLKO.1 688 CDS 100% 0.750 0.525 N LRTM1 n/a
9 TRCN0000137528 CTTTCCCTGGAAAGCAGACTT pLKO.1 479 CDS 100% 0.495 0.347 N LRTM1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_020678.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12344 pDONR223 100% 77.9% 77.9% None 1_228del n/a
2 ccsbBroad304_12344 pLX_304 0% 77.9% 77.9% V5 1_228del n/a
3 TRCN0000474025 ATCTACGGCACTCGCATACAGTTC pLX_317 65.7% 77.9% 77.9% V5 1_228del n/a
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