Transcript: Human NM_020791.2

Homo sapiens TAO kinase 1 (TAOK1), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-07-29
Taxon:
Homo sapiens (human)
Gene:
TAOK1 (57551)
Length:
12096
CDS:
195..3200

Additional Resources:

NCBI RefSeq record:
NM_020791.2
NBCI Gene record:
TAOK1 (57551)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

Clone ID Target Seq Vector PAM Seq Cut Position Cut % of CDS Length Exon On Target Score[?] Other Matching Genes Orig. Target Gene[?] Notes Addgene[?]
1 BRDN0001147719 ATGATGGCAAAGTAGATGTG pXPR_003 TGG 621 21% 8 1.2099 TAOK1 TAOK1 76808
2 BRDN0001148505 TGGGCGTCATAACTTAGAGC pXPR_003 AGG 1888 63% 16 0.3329 TAOK1 TAOK1 76806
3 BRDN0001145897 GAAATAGCAGCAATTACACA pXPR_003 TGG 395 13% 6 0.3256 TAOK1 TAOK1 76807
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shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_020791.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000037524 CCCAAGTATCTCGTCACAAAT pLKO.1 1462 CDS 100% 13.200 18.480 N TAOK1 n/a
2 TRCN0000333379 CCCAAGTATCTCGTCACAAAT pLKO_005 1462 CDS 100% 13.200 18.480 N TAOK1 n/a
3 TRCN0000194926 CGAGAACACTTTGCTACTATA pLKO.1 1497 CDS 100% 13.200 18.480 N TAOK1 n/a
4 TRCN0000037525 CCCAACAGTATAGAATACAAA pLKO.1 450 CDS 100% 5.625 4.500 N TAOK1 n/a
5 TRCN0000333306 CCCAACAGTATAGAATACAAA pLKO_005 450 CDS 100% 5.625 4.500 N TAOK1 n/a
6 TRCN0000037528 CGAGTGTCACTTCACAAATAT pLKO.1 3151 CDS 100% 15.000 10.500 N TAOK1 n/a
7 TRCN0000333380 CGAGTGTCACTTCACAAATAT pLKO_005 3151 CDS 100% 15.000 10.500 N TAOK1 n/a
8 TRCN0000196802 GTCTAATGAATGGTCTGATTA pLKO.1 932 CDS 100% 13.200 9.240 N TAOK1 n/a
9 TRCN0000196941 GCAGCTTAAAGAGGAGCTAAA pLKO.1 1886 CDS 100% 10.800 7.560 N TAOK1 n/a
10 TRCN0000037526 CGCCTCAGATTAGACAAAGAT pLKO.1 1671 CDS 100% 5.625 3.938 N TAOK1 n/a
11 TRCN0000037527 GCCTAAGAGTTTGAAGTCTAA pLKO.1 2327 CDS 100% 4.950 3.465 N TAOK1 n/a
12 TRCN0000363677 GCCTAAGAGTTTGAAGTCTAA pLKO_005 2327 CDS 100% 4.950 3.465 N TAOK1 n/a
13 TRCN0000196451 GCTGAGTGCATATGGTATATT pLKO.1 3304 3UTR 100% 0.000 0.000 N TAOK1 n/a
14 TRCN0000312884 TAATTGGGATGTCATAGTATT pLKO_005 3362 3UTR 100% 13.200 9.240 N Taok1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_020791.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.