Transcript: Human NM_021156.4

Homo sapiens thioredoxin related transmembrane protein 4 (TMX4), mRNA.

Source:
NCBI, updated 2019-05-02
Taxon:
Homo sapiens (human)
Gene:
TMX4 (56255)
Length:
6103
CDS:
149..1198

Additional Resources:

NCBI RefSeq record:
NM_021156.4
NBCI Gene record:
TMX4 (56255)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_021156.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000064038 GATGGGATATTCCGCCGTTAT pLKO.1 494 CDS 100% 10.800 15.120 N TMX4 n/a
2 TRCN0000258201 GGCGAGTGGATGCTGAAATTT pLKO_005 305 CDS 100% 15.000 12.000 N Tmx4 n/a
3 TRCN0000424210 GTTTGTACCAAATCCTTAATT pLKO_005 1262 3UTR 100% 15.000 10.500 N TMX4 n/a
4 TRCN0000437681 GACTCCTTGAGGCAGCGTAAA pLKO_005 1151 CDS 100% 10.800 7.560 N TMX4 n/a
5 TRCN0000064040 GCCAGCAGACTGATTCAGAAT pLKO.1 348 CDS 100% 4.950 3.465 N TMX4 n/a
6 TRCN0000064042 GTAGATGATGAAGAAGAGAAA pLKO.1 929 CDS 100% 4.950 3.465 N TMX4 n/a
7 TRCN0000064041 CAAGGCATTTATCTGAGCGTT pLKO.1 804 CDS 100% 2.640 1.848 N TMX4 n/a
8 TRCN0000430981 GCCACCATGCCTGGCTAATTT pLKO_005 3842 3UTR 100% 15.000 7.500 Y GTF2IRD2 n/a
9 TRCN0000252324 TTAGCATCTCTGGCAAGATTT pLKO_005 639 CDS 100% 13.200 18.480 N Tmx4 n/a
10 TRCN0000165704 CAATGGCACAATCTTGGCTCA pLKO.1 3747 3UTR 100% 2.160 1.080 Y LOC652276 n/a
11 TRCN0000413041 AGGAAGAAGAGGAGGAGGAAG pLKO_005 978 CDS 100% 4.050 2.025 Y Myt1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_021156.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08637 pDONR223 99.9% 99.9% 99.7% None 907G>A n/a
2 ccsbBroad304_08637 pLX_304 0% 99.9% 99.7% V5 907G>A n/a
3 TRCN0000473276 CACATCTACTGGGTCACACAGCCT pLX_317 43% 99.9% 99.7% V5 907G>A n/a
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