Transcript: Human NM_021252.5

Homo sapiens RAB18, member RAS oncogene family (RAB18), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-21
Taxon:
Homo sapiens (human)
Gene:
RAB18 (22931)
Length:
4875
CDS:
67..687

Additional Resources:

NCBI RefSeq record:
NM_021252.5
NBCI Gene record:
RAB18 (22931)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_021252.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000021981 CGTGAAGTCGATAGAAATGAA pLKO.1 451 CDS 100% 5.625 7.875 N RAB18 n/a
2 TRCN0000021979 GCACGAAAGCATTCCATGTTA pLKO.1 484 CDS 100% 5.625 7.875 N RAB18 n/a
3 TRCN0000177937 GCAACAATAGGTGTTGACTTT pLKO.1 181 CDS 100% 0.495 0.693 N Rab18 n/a
4 TRCN0000277126 CATTAACTCCCAGCTATTATA pLKO_005 281 CDS 100% 15.000 12.000 N Rab18 n/a
5 TRCN0000021980 GAACATTAACTCCCAGCTATT pLKO.1 278 CDS 100% 10.800 8.640 N RAB18 n/a
6 TRCN0000021983 CACAGGGTGTTATATTAGTTT pLKO.1 308 CDS 100% 5.625 4.500 N RAB18 n/a
7 TRCN0000178291 GCTAAACTTGCAATATGGGAT pLKO.1 235 CDS 100% 2.640 2.112 N Rab18 n/a
8 TRCN0000320008 GCTAAACTTGCAATATGGGAT pLKO_005 235 CDS 100% 2.640 2.112 N Rab18 n/a
9 TRCN0000216622 GTAAACATGCTAGTTGGAAAT pLKO.1 412 CDS 100% 10.800 7.560 N Rab18 n/a
10 TRCN0000177028 GATGGAAATAAGGCTAAACTT pLKO.1 223 CDS 100% 5.625 3.938 N Rab18 n/a
11 TRCN0000320009 GATGGAAATAAGGCTAAACTT pLKO_005 223 CDS 100% 5.625 3.938 N Rab18 n/a
12 TRCN0000021982 TGGTGGTTATTGCTCTGTGTT pLKO.1 663 CDS 100% 4.950 3.465 N RAB18 n/a
13 TRCN0000182111 CCCAGCTATTATAGAGGTGCA pLKO.1 289 CDS 100% 2.160 1.512 N Rab18 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_021252.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.