Transcript: Mouse NM_021534.3

Mus musculus peroxisomal membrane protein 4 (Pxmp4), mRNA.

Source:
NCBI, updated 2017-05-13
Taxon:
Mus musculus (mouse)
Gene:
Pxmp4 (59038)
Length:
1468
CDS:
45..683

Additional Resources:

NCBI RefSeq record:
NM_021534.3
NBCI Gene record:
Pxmp4 (59038)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_021534.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000124646 CCTGCTGTTTGGAGAGAACAA pLKO.1 383 CDS 100% 4.950 3.465 N Pxmp4 n/a
2 TRCN0000124644 GCCTGCCTTCTCAAAGTCATA pLKO.1 795 3UTR 100% 4.950 3.465 N Pxmp4 n/a
3 TRCN0000124647 CCATTCTGAAAGCCACGTACA pLKO.1 241 CDS 100% 4.050 2.835 N Pxmp4 n/a
4 TRCN0000124645 GCCTGCTTTGTGTTTGCCTAT pLKO.1 279 CDS 100% 4.050 2.835 N Pxmp4 n/a
5 TRCN0000124648 GCTGGCCGTGATAAAGGGCTT pLKO.1 122 CDS 100% 0.720 0.504 N Pxmp4 n/a
6 TRCN0000054408 ACGCCTTTAATCCCAGCACTT pLKO.1 1344 3UTR 100% 4.050 2.025 Y Mtif2 n/a
7 TRCN0000127494 CCAGATCAACATGTACCTGTT pLKO.1 416 CDS 100% 4.050 5.670 N PXMP4 n/a
8 TRCN0000088533 CGGGAGGCAGAGGCAGGCAAT pLKO.1 1364 3UTR 100% 0.000 0.000 Y Trrap n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_021534.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.