Transcript: Human NM_024061.3

Homo sapiens zinc finger protein 655 (ZNF655), transcript variant 2, mRNA.

Source:
NCBI, updated 2018-06-23
Taxon:
Homo sapiens (human)
Gene:
ZNF655 (79027)
Length:
1608
CDS:
394..939

Additional Resources:

NCBI RefSeq record:
NM_024061.3
NBCI Gene record:
ZNF655 (79027)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_024061.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000016685 TGCACCTTACTCGAGAGGAAT pLKO.1 644 CDS 100% 0.000 0.000 N ZNF655 n/a
2 TRCN0000280577 TGCACCTTACTCGAGAGGAAT pLKO_005 644 CDS 100% 0.000 0.000 N ZNF655 n/a
3 TRCN0000016686 CAGCAGGAATCTCCAAGAGAT pLKO.1 851 CDS 100% 4.950 3.465 N ZNF655 n/a
4 TRCN0000297873 CAGCAGGAATCTCCAAGAGAT pLKO_005 851 CDS 100% 4.950 3.465 N ZNF655 n/a
5 TRCN0000016687 CCAGGAGTTTGTGACATTCGA pLKO.1 612 CDS 100% 3.000 2.100 N ZNF655 n/a
6 TRCN0000280578 CCAGGAGTTTGTGACATTCGA pLKO_005 612 CDS 100% 3.000 2.100 N ZNF655 n/a
7 TRCN0000016684 CAAGTGCTTTCTCTGGAGAAA pLKO.1 815 CDS 100% 0.495 0.347 N ZNF655 n/a
8 TRCN0000280638 CAAGTGCTTTCTCTGGAGAAA pLKO_005 815 CDS 100% 0.495 0.347 N ZNF655 n/a
9 TRCN0000016683 CCCGGATTCATAGTGTGAATT pLKO.1 767 CDS 100% 0.000 0.000 N ZNF655 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_024061.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15977 pDONR223 0% 100% 100% None n/a
2 ccsbBroad304_15977 pLX_304 0% 100% 100% V5 n/a
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