Transcript: Human NM_024700.4

Homo sapiens Smad nuclear interacting protein 1 (SNIP1), mRNA.

Source:
NCBI, updated 2019-09-27
Taxon:
Homo sapiens (human)
Gene:
SNIP1 (79753)
Length:
4554
CDS:
65..1255

Additional Resources:

NCBI RefSeq record:
NM_024700.4
NBCI Gene record:
SNIP1 (79753)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_024700.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000432360 GCATTGCAGACATTCCAATTG pLKO_005 927 CDS 100% 10.800 15.120 N SNIP1 n/a
2 TRCN0000075144 GCGGTCTTTCAATATCGGCTT pLKO.1 974 CDS 100% 2.160 3.024 N SNIP1 n/a
3 TRCN0000432785 AGGCAATGGAACCTTCTTAAA pLKO_005 1063 CDS 100% 13.200 10.560 N SNIP1 n/a
4 TRCN0000419247 TCAGAACAGTCTCACCAATTA pLKO_005 1488 3UTR 100% 13.200 9.240 N SNIP1 n/a
5 TRCN0000075145 CCACCAAAGGAGAACGTCTAA pLKO.1 505 CDS 100% 4.950 3.465 N SNIP1 n/a
6 TRCN0000075143 GCTGCTTACATATAGTGTGTA pLKO.1 2299 3UTR 100% 4.950 3.465 N SNIP1 n/a
7 TRCN0000075147 CCAGTCATGTACATACATCGA pLKO.1 875 CDS 100% 2.640 1.848 N SNIP1 n/a
8 TRCN0000075146 CCGTCTTGTTCAAAGCAGCAT pLKO.1 953 CDS 100% 2.640 1.848 N SNIP1 n/a
9 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 3871 3UTR 100% 5.625 2.813 Y KLHL30 n/a
10 TRCN0000139610 CGAACTCCTGACCTTGTGATA pLKO.1 3835 3UTR 100% 4.950 2.475 Y RBM48 n/a
11 TRCN0000264189 CAAGTAGCTGGGACTACAGGA pLKO_005 3718 3UTR 100% 2.640 1.320 Y LINC01098 n/a
12 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 3871 3UTR 100% 5.625 2.813 Y EID2B n/a
13 TRCN0000138772 GCAGGAGAATCGCTTGAACTT pLKO.1 3081 3UTR 100% 4.950 2.475 Y DCAF11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_024700.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04118 pDONR223 100% 99.9% 100% None 84G>A n/a
2 ccsbBroad304_04118 pLX_304 0% 99.9% 100% V5 84G>A n/a
3 TRCN0000492147 TCGCGTGTACACTTAGTATTCAGC pLX_317 29.3% 99.9% 100% V5 84G>A n/a
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