Transcript: Mouse NM_025392.2

Mus musculus BRCA2 and CDKN1A interacting protein (Bccip), mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Bccip (66165)
Length:
1260
CDS:
26..976

Additional Resources:

NCBI RefSeq record:
NM_025392.2
NBCI Gene record:
Bccip (66165)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_025392.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000088415 GCAGAGGAAGAGTTCTTCTAT pLKO.1 782 CDS 100% 5.625 3.938 N Bccip n/a
2 TRCN0000088417 AGATGGTCCTTCGATGATGTT pLKO.1 866 CDS 100% 4.950 3.465 N Bccip n/a
3 TRCN0000088413 CCCATTGAAGAGATACTGAAA pLKO.1 1028 3UTR 100% 4.950 3.465 N Bccip n/a
4 TRCN0000088416 GATAACGATTATGGCGGAATT pLKO.1 233 CDS 100% 0.000 0.000 N Bccip n/a
5 TRCN0000145217 GAAGAAGAAGAAGAGGATGAT pLKO.1 104 CDS 100% 4.950 2.475 Y PTMS n/a
6 TRCN0000190517 GAGGAGGAAGAAGAAGAAGAA pLKO.1 98 CDS 100% 4.950 2.475 Y G430095P16Rik n/a
7 TRCN0000419222 GAAGAAGAAGAGGATGAGGAG pLKO_005 107 CDS 100% 2.160 1.080 Y Myt1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_025392.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.