Transcript: Mouse NM_026047.4

Mus musculus ring finger protein 219 (Rnf219), mRNA.

Source:
NCBI, updated 2017-05-14
Taxon:
Mus musculus (mouse)
Gene:
Rnf219 (72486)
Length:
3456
CDS:
55..2223

Additional Resources:

NCBI RefSeq record:
NM_026047.4
NBCI Gene record:
Rnf219 (72486)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_026047.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000428294 AGGTTTGGATCGTCCTTATTT pLKO_005 2041 CDS 100% 15.000 21.000 N Rnf219 n/a
2 TRCN0000125458 CTGGCCGATAATCCAAGTAAA pLKO.1 487 CDS 100% 13.200 18.480 N Rnf219 n/a
3 TRCN0000443114 GGTTCAGAGGGAAACGCAATA pLKO_005 1486 CDS 100% 10.800 8.640 N Rnf219 n/a
4 TRCN0000125456 CCCTCGAAATGAATCGAACAA pLKO.1 1589 CDS 100% 4.950 3.960 N Rnf219 n/a
5 TRCN0000434050 AGATGATGTGGATAAGTTAAA pLKO_005 579 CDS 100% 13.200 9.240 N Rnf219 n/a
6 TRCN0000125455 CCACGAGATGAGTGAAGATTT pLKO.1 1899 CDS 100% 13.200 9.240 N Rnf219 n/a
7 TRCN0000125454 CCTGTGTTTCTTAGAACATTT pLKO.1 2566 3UTR 100% 13.200 9.240 N Rnf219 n/a
8 TRCN0000438548 GCAGTTCCCAGGGATTATTTG pLKO_005 2012 CDS 100% 13.200 9.240 N Rnf219 n/a
9 TRCN0000417539 AGACCATTCTGGATCCTTTAG pLKO_005 428 CDS 100% 10.800 7.560 N Rnf219 n/a
10 TRCN0000125457 CAGTCCAAAGTAGAACAGTAT pLKO.1 721 CDS 100% 4.950 3.465 N Rnf219 n/a
11 TRCN0000436057 CTGCACTCCCTTGTCACTTAG pLKO_005 1215 CDS 100% 10.800 6.480 N Rnf219 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_026047.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.