Transcript: Mouse NM_026222.2

Mus musculus coiled-coil domain containing 39 (Ccdc39), mRNA.

Source:
NCBI, updated 2017-05-14
Taxon:
Mus musculus (mouse)
Gene:
Ccdc39 (51938)
Length:
3616
CDS:
117..2930

Additional Resources:

NCBI RefSeq record:
NM_026222.2
NBCI Gene record:
Ccdc39 (51938)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_026222.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000435085 AGCCGAAATTGCAGCGAATAA pLKO_005 2494 CDS 100% 13.200 18.480 N Ccdc39 n/a
2 TRCN0000198021 CAGCTAGTAGTGGCAGTAATT pLKO.1 2875 CDS 100% 13.200 18.480 N Ccdc39 n/a
3 TRCN0000200052 CGAGTCAAGAATGAGACCCAA pLKO.1 402 CDS 100% 2.640 3.696 N Ccdc39 n/a
4 TRCN0000433409 GAACGCAGAATGTCACGATTA pLKO_005 1500 CDS 100% 10.800 8.640 N Ccdc39 n/a
5 TRCN0000435634 TGACTATGAAGAACGAATTAA pLKO_005 254 CDS 100% 15.000 10.500 N Ccdc39 n/a
6 TRCN0000430257 AGACGCTAAGTGCGCAGTTAG pLKO_005 709 CDS 100% 10.800 7.560 N Ccdc39 n/a
7 TRCN0000176503 CCTTGAACTTAAGAAGACAAT pLKO.1 1568 CDS 100% 4.950 3.465 N Ccdc39 n/a
8 TRCN0000177337 GAACAACTGTATTCTTCAGAT pLKO.1 3396 3UTR 100% 4.950 3.465 N Ccdc39 n/a
9 TRCN0000182268 GCTCCGTGAGATCATACAGTT pLKO.1 2597 CDS 100% 4.950 3.465 N Ccdc39 n/a
10 TRCN0000197502 CACTTAGCAAATAATGCCAAA pLKO.1 2412 CDS 100% 4.050 2.835 N Ccdc39 n/a
11 TRCN0000197888 GCTAAGATCAACAAAGCTGAA pLKO.1 2163 CDS 100% 4.050 2.835 N Ccdc39 n/a
12 TRCN0000182114 CATGTGACAAAGCAGAGGGAA pLKO.1 3198 3UTR 100% 2.640 1.848 N Ccdc39 n/a
13 TRCN0000176967 GAGAAGATCAAGTTTCTGGAA pLKO.1 906 CDS 100% 2.640 1.848 N Ccdc39 n/a
14 TRCN0000200446 GCAGAGGGAAATAAGCAGGTT pLKO.1 3209 3UTR 100% 2.640 1.848 N Ccdc39 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_026222.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.