Transcript: Mouse NM_026385.4

Mus musculus plasma membrane proteolipid (Pllp), mRNA.

Source:
NCBI, updated 2017-05-13
Taxon:
Mus musculus (mouse)
Gene:
Pllp (67801)
Length:
1889
CDS:
73..621

Additional Resources:

NCBI RefSeq record:
NM_026385.4
NBCI Gene record:
Pllp (67801)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_026385.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000103062 CCGTTGGTGTTACTGATCTTT pLKO.1 373 CDS 100% 5.625 7.875 N Pllp n/a
2 TRCN0000307617 CTACGGAGTGAGCGCTTTCTT pLKO_005 531 CDS 100% 5.625 7.875 N Pllp n/a
3 TRCN0000103061 GCTGGTGACAATCGTCTTCTT pLKO.1 303 CDS 100% 4.950 3.960 N Pllp n/a
4 TRCN0000103064 TCTCTACATTACTGCCTTTAT pLKO.1 411 CDS 100% 13.200 9.240 N Pllp n/a
5 TRCN0000298441 TCTCTACATTACTGCCTTTAT pLKO_005 411 CDS 100% 13.200 9.240 N Pllp n/a
6 TRCN0000103060 CCTCAGTATAACCCTAACAAA pLKO.1 908 3UTR 100% 5.625 3.938 N Pllp n/a
7 TRCN0000288417 CCTCAGTATAACCCTAACAAA pLKO_005 908 3UTR 100% 5.625 3.938 N Pllp n/a
8 TRCN0000103063 CCTGTTTCAACTGCACATGAA pLKO.1 333 CDS 100% 4.950 3.465 N Pllp n/a
9 TRCN0000295743 CCTATGGCTGGGTCATGTTTG pLKO_005 266 CDS 100% 10.800 6.480 N Pllp n/a
10 TRCN0000307618 TTGCTTGTCTGGTGATGATTG pLKO_005 509 CDS 100% 10.800 6.480 N Pllp n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_026385.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03201 pDONR223 100% 87% 90.1% None (many diffs) n/a
2 ccsbBroad304_03201 pLX_304 0% 87% 90.1% V5 (many diffs) n/a
3 TRCN0000471173 TCGAATAAAACCCTCCCTTTAACC pLX_317 80.3% 87% 90.1% V5 (many diffs) n/a
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