Transcript: Mouse NM_026452.2

Mus musculus coenzyme Q9 (Coq9), mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Coq9 (67914)
Length:
1693
CDS:
6..947

Additional Resources:

NCBI RefSeq record:
NM_026452.2
NBCI Gene record:
Coq9 (67914)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_026452.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000196003 CAAGAACCTGACGGGTCTAAA pLKO.1 914 CDS 100% 13.200 9.240 N Coq9 n/a
2 TRCN0000137877 CAGTGGAAACCAGACTGAGAA pLKO.1 544 CDS 100% 4.950 3.465 N COQ9 n/a
3 TRCN0000184038 CCACCCATTGAACAGGATGTT pLKO.1 1010 3UTR 100% 4.950 3.465 N Coq9 n/a
4 TRCN0000138364 CTACAACACAACAGAGCTGGT pLKO.1 740 CDS 100% 2.160 1.512 N COQ9 n/a
5 TRCN0000281375 CTACAACACAACAGAGCTGGT pLKO_005 740 CDS 100% 2.160 1.512 N COQ9 n/a
6 TRCN0000184656 GAAGAGGAAGACAGACCAGTT pLKO.1 512 CDS 100% 4.050 2.430 N Coq9 n/a
7 TRCN0000196162 GATGGCAGTGAGCTGATTCTT pLKO.1 411 CDS 100% 5.625 3.375 N Coq9 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_026452.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03771 pDONR223 100% 87.9% 90.2% None (many diffs) n/a
2 ccsbBroad304_03771 pLX_304 0% 87.9% 90.2% V5 (many diffs) n/a
3 TRCN0000468128 GTATACTTGTCGACCCACTTTTAG pLX_317 43.2% 87.9% 90.2% V5 (many diffs) n/a
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