Transcript: Mouse NM_026599.5

Mus musculus cingulin-like 1 (Cgnl1), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-06-04
Taxon:
Mus musculus (mouse)
Gene:
Cgnl1 (68178)
Length:
6781
CDS:
110..4003

Additional Resources:

NCBI RefSeq record:
NM_026599.5
NBCI Gene record:
Cgnl1 (68178)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_026599.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000249360 ATTGATGGCCACCCTTATATA pLKO_005 254 CDS 100% 15.000 10.500 N Cgnl1 n/a
2 TRCN0000249361 TCATGTCATCATTCGATATTT pLKO_005 5921 3UTR 100% 15.000 10.500 N Cgnl1 n/a
3 TRCN0000249359 TCCCTGCCAGCACCGAATAAA pLKO_005 1553 CDS 100% 15.000 10.500 N Cgnl1 n/a
4 TRCN0000249363 AGACTTAAAGAGCCGGATTAT pLKO_005 3478 CDS 100% 13.200 9.240 N Cgnl1 n/a
5 TRCN0000215981 CATGTCATCATTCGATATTTG pLKO.1 5922 3UTR 100% 13.200 9.240 N Cgnl1 n/a
6 TRCN0000249362 CTTAAGACACTGTCTAGTAAA pLKO_005 3872 CDS 100% 13.200 9.240 N Cgnl1 n/a
7 TRCN0000217916 GACTTAAAGAGCCGGATTATC pLKO.1 3479 CDS 100% 13.200 9.240 N Cgnl1 n/a
8 TRCN0000183486 GCTTAAGACACTGTCTAGTAA pLKO.1 3871 CDS 100% 5.625 3.938 N Cgnl1 n/a
9 TRCN0000196062 GCAGCTCAACTCTCTGAAGAA pLKO.1 3841 CDS 100% 4.950 3.465 N Cgnl1 n/a
10 TRCN0000182290 GAGGAGAATGAGAAGCTGCTA pLKO.1 2582 CDS 100% 2.640 1.320 Y Ccdc155 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_026599.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.