Transcript: Mouse NM_026949.3

Mus musculus CCR4-NOT transcription complex, subunit 8 (Cnot8), mRNA.

Source:
NCBI, updated 2017-06-11
Taxon:
Mus musculus (mouse)
Gene:
Cnot8 (69125)
Length:
2035
CDS:
151..1029

Additional Resources:

NCBI RefSeq record:
NM_026949.3
NBCI Gene record:
Cnot8 (69125)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_026949.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000096592 CGTCCATTTACGATGTGAAAT pLKO.1 719 CDS 100% 13.200 18.480 N Cnot8 n/a
2 TRCN0000238285 GTACGGCCGATCGGTGAATTT pLKO_005 292 CDS 100% 13.200 18.480 N Cnot8 n/a
3 TRCN0000238288 GTGCTTAAGGTTAGGCATTTA pLKO_005 1770 3UTR 100% 13.200 18.480 N Cnot8 n/a
4 TRCN0000096591 CCGTCCATTTACGATGTGAAA pLKO.1 718 CDS 100% 4.950 6.930 N Cnot8 n/a
5 TRCN0000096590 CGGTGCAATGTTGATCTTCTT pLKO.1 346 CDS 100% 4.950 6.930 N Cnot8 n/a
6 TRCN0000096593 AGCTCCATAGATTACCAGTAT pLKO.1 316 CDS 100% 4.950 3.960 N Cnot8 n/a
7 TRCN0000238286 CACTTTGCAGAGCTGCTTATG pLKO_005 553 CDS 100% 10.800 7.560 N Cnot8 n/a
8 TRCN0000238287 TATTGACGATGCCAAGTATTG pLKO_005 897 CDS 100% 10.800 7.560 N Cnot8 n/a
9 TRCN0000238284 TGCGGAAGATCCGTGAGATTG pLKO_005 221 CDS 100% 10.800 7.560 N Cnot8 n/a
10 TRCN0000096589 CCACAGAAAGAAAGGACAATT pLKO.1 1815 3UTR 100% 13.200 7.920 N Cnot8 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_026949.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02143 pDONR223 100% 88.4% 99.3% None (many diffs) n/a
2 ccsbBroad304_02143 pLX_304 0% 88.4% 99.3% V5 (many diffs) n/a
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