Transcript: Mouse NM_027879.2

Mus musculus cell division cycle 40 (Cdc40), mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Cdc40 (71713)
Length:
3370
CDS:
69..1808

Additional Resources:

NCBI RefSeq record:
NM_027879.2
NBCI Gene record:
Cdc40 (71713)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_027879.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000241270 ACTGGACCCTTCGTTAGATAA pLKO_005 482 CDS 100% 13.200 18.480 N Cdc40 n/a
2 TRCN0000241268 CGGCGCTGTCTGAGAACATTT pLKO_005 1032 CDS 100% 13.200 9.240 N Cdc40 n/a
3 TRCN0000257060 TCGCTTTAAAGCCCATGATAA pLKO_005 1700 CDS 100% 13.200 9.240 N Cdc40 n/a
4 TRCN0000255499 TTTCACTGTCTGGGATCATTT pLKO_005 1821 3UTR 100% 13.200 9.240 N Cdc40 n/a
5 TRCN0000241271 GCCTTATGATGTTGGCCTATT pLKO_005 1925 3UTR 100% 10.800 7.560 N Cdc40 n/a
6 TRCN0000241269 GTTGATGAGAACCGAAGATTC pLKO_005 1347 CDS 100% 10.800 7.560 N Cdc40 n/a
7 TRCN0000001185 GAACATTTATTGGTCACAGTA pLKO.1 1045 CDS 100% 4.950 3.465 N CDC40 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_027879.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.