Transcript: Mouse NM_028717.6

Mus musculus amyotrophic lateral sclerosis 2 (juvenile) (Als2), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Als2 (74018)
Length:
6512
CDS:
136..5091

Additional Resources:

NCBI RefSeq record:
NM_028717.6
NBCI Gene record:
Als2 (74018)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_028717.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000041030 GCGGTGTATAGAATGACATAT pLKO.1 4291 CDS 100% 13.200 18.480 N Als2 n/a
2 TRCN0000316886 GCGGTGTATAGAATGACATAT pLKO_005 4291 CDS 100% 13.200 18.480 N Als2 n/a
3 TRCN0000041028 CCCTGAACAAAGAAGACCATT pLKO.1 3395 CDS 100% 4.950 3.960 N Als2 n/a
4 TRCN0000316825 CCCTGAACAAAGAAGACCATT pLKO_005 3395 CDS 100% 4.950 3.960 N Als2 n/a
5 TRCN0000041032 CCCGTCATTAGCAGTTAGGAT pLKO.1 570 CDS 100% 3.000 2.400 N Als2 n/a
6 TRCN0000316882 CCCGTCATTAGCAGTTAGGAT pLKO_005 570 CDS 100% 3.000 2.400 N Als2 n/a
7 TRCN0000041029 CCTGCCATTGATTTCCTAAAT pLKO.1 2527 CDS 100% 13.200 9.240 N Als2 n/a
8 TRCN0000316814 CCTGCCATTGATTTCCTAAAT pLKO_005 2527 CDS 100% 13.200 9.240 N Als2 n/a
9 TRCN0000041031 GCAGCAGATCAGCACAACATT pLKO.1 4794 CDS 100% 5.625 3.938 N Als2 n/a
10 TRCN0000316885 GCAGCAGATCAGCACAACATT pLKO_005 4794 CDS 100% 5.625 3.938 N Als2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_028717.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.