Transcript: Mouse NM_028724.4

Mus musculus Ras and Rab interactor 2 (Rin2), mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Rin2 (74030)
Length:
4668
CDS:
388..2964

Additional Resources:

NCBI RefSeq record:
NM_028724.4
NBCI Gene record:
Rin2 (74030)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_028724.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000366133 GCAGATTTATTCCGGCTTATT pLKO_005 748 CDS 100% 13.200 18.480 N Rin2 n/a
2 TRCN0000374623 CCATGTGTCCAGCACCGATAT pLKO_005 1917 CDS 100% 10.800 15.120 N Rin2 n/a
3 TRCN0000077540 CCTCTCAAAGAGTTTACTATA pLKO.1 679 CDS 100% 13.200 10.560 N Rin2 n/a
4 TRCN0000374622 GCTTGAACTGGACACGGAAAT pLKO_005 2412 CDS 100% 10.800 8.640 N Rin2 n/a
5 TRCN0000077539 CCGGGACAAATGCACCTATTT pLKO.1 1845 CDS 100% 13.200 9.240 N Rin2 n/a
6 TRCN0000366204 GCACGGAGAAGGAGGCTATTA pLKO_005 2469 CDS 100% 13.200 9.240 N Rin2 n/a
7 TRCN0000077538 GCTGAGAATTAGAAGAGAAAT pLKO.1 3858 3UTR 100% 13.200 9.240 N Rin2 n/a
8 TRCN0000366134 TGCAGACCATCCGGCAGTTTA pLKO_005 1940 CDS 100% 13.200 9.240 N Rin2 n/a
9 TRCN0000374559 GGGCATCCTTTAGATACATTG pLKO_005 3114 3UTR 100% 10.800 7.560 N Rin2 n/a
10 TRCN0000077542 GCCTTATAAATGGAGTGCATT pLKO.1 983 CDS 100% 4.950 3.465 N Rin2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_028724.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12040 pDONR223 100% 40.2% 43% None (many diffs) n/a
2 ccsbBroad304_12040 pLX_304 0% 40.2% 43% V5 (many diffs) n/a
3 TRCN0000475994 TTCTACCCCCATTGAACAAACTGT pLX_317 23% 40.2% 43% V5 (many diffs) n/a
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